Transcript 548 | MetamORF

Transcript

ID CARD

MetamORF ID

548

ENST00000478798

Name

BCCIP-205

Strand

Biotype

processed_transcript

Start-end positions

125825494-125831537

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

HGNC:978

Aliases

BCCIP,
BCCIPalpha, ENSG00000107949, HGNC:978,
NCBI:56647, OFF:BCCIP, TOK-1

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405666	66	GAT ...	DND ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
552	87	GTG ...	VLN ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
279028	57	ATG ...	MFQ ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
900006	33	TTT ...	FWF ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
899999	213	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
279032	36	ATG ...	MIW ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1
99140	141	GTG ...	VMA ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL
547	99	GTG ...	VNT ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1
900010	159	GTT ...	VLR ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
561	39	GTG ...	VKR ...	Ribo-seq	GTG	moderate	16	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900008	69	AGT ...	SWF ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
405668	48	ATT ...	IKK ...	Ribo-seq	ATT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
559	51	GTG ...	VRR ...	Ribo-seq	GTG	weak	17	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
550	108	TTG ...	LLS ...	Ribo-seq	TTG		14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
900003	63	CAG ...	QNH ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
279030	39	ATG ...	MMI ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	ncRNA sORF	Blood, HCT116, HEK293, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1
99137	99	GTG ...	VNI ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, RPE-1
554	84	TTG ...	LNK ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
99142	138	ATG ...	MAC ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL

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