Transcript 95034 | MetamORF

Transcript

ID CARD

MetamORF ID

95034

ENST00000478698

Name

HNRNPH3-206

Strand

Biotype

processed_transcript

Start-end positions

68338806-68342269

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

HGNC:5043

Aliases

2H9,
ENSG00000096746, HGNC:5043, HNRNPH3,
HNRPH3, NCBI:3189, OFF:HNRNPH3

Chr 10

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
274733	171	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
95058	45	GTG ...	VMQ ...	Ribo-seq	GTG	weak	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
95033	72	ATG ...	MEV ...	Ribo-seq	ATG	strong	31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95042	51	GTG ...	VAI ...	Ribo-seq	GTG	strong	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
274727	273	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
404404	75	AAT ...	NDG ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
95044	30	ATG ...	MGM ...	Ribo-seq	ATG	strong	31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95062	51	TTG ...	LPF ...	Ribo-seq	TTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
95056	48	CTG ...	LVM ...	Ribo-seq	CTG	strong	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
274735	120	ATG ...	MDQ ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, hES, HFF, LCL, RPE-1
404410	102	CAG ...	QGG ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
95050	63	ATG ...	MAM ...	Ribo-seq	ATG	strong	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
895434	45	TGG ...	WQS ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
895430	171	ATA ...	IRV ...	Ribo-seq	ATA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
274731	246	CTG ...	LEW ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
95048	45	GTG ...	VFS ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL, MM1S, RPE-1, U2OS
95052	57	ATG ...	MVE ...	Ribo-seq	ATG	strong	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
95046	96	TTG ...	LAN ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, RPE-1
97102	108	GTG ...	VTH ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa
95060	42	ATG ...	MQV ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
895432	147	GCT ...	ADG ...	Ribo-seq	GCT	strong	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
95074	81	TTG ...	LNS ...	Ribo-seq	TTG	weak	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95036	63	TTG ...	LMT ...	Ribo-seq	TTG	moderate	31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95040	54	ATG ...	MVA ...	Ribo-seq	ATG	strong	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
274729	261	CTG ...	LAW ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
95072	30	ATG ...	MAE ...	Ribo-seq	ATG	moderate	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
95066	45	TTG ...	LIL ...	Ribo-seq	TTG	moderate	31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1816134	99	GTG ...	VGC ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	ncRNA sORF	HeLa
895438	33	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
895442	36	GGG ...	GEQ ...	Ribo-seq	GGG	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
95070	33	CTG ...	LMA ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
274737	111	TTG ...	LEE ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
95038	60	ATG ...	MTM ...	Ribo-seq	ATG	weak	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895428	36	CGT ...	RTY ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1816136	60	GTG ...	VFS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
2902472	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1816132	108	GTG ...	VDG ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	ncRNA sORF	HeLa
95080	42	GTG ...	VVE ...	Ribo-seq	GTG	strong	10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
95084	30	GTG ...	VEV ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	ncRNA sORF	HEK293, HFF, LCL, MDA-MB-231, RPE-1
95054	54	GTG ...	VEL ...	Ribo-seq	GTG	strong	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
895426	48	TGG ...	WWS ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
95068	39	TTG ...	LEL ...	Ribo-seq	TTG	strong	29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
274745	48	ATG ...	MAW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	LCL
404408	72	ACT ...	TPG ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
95078	45	GTG ...	VVV ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	ncRNA sORF	HEK293, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
404402	102	GGT ...	GGY ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	HCT116
1816138	42	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
404406	63	GAT ...	DDR ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	HCT116
895436	135	GCC ...	ATG ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
95082	39	GTG ...	VEA ...	Ribo-seq	GTG	strong	10	sORFs_org_Human	ncRNA sORF	HEK293, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
274739	132	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	LCL, RPE-1
895440	102	CAT ...	HRY ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
95064	30	GTG ...	VQL ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS

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