Transcript 95913 | MetamORF

Transcript

ID CARD

MetamORF ID

95913

ENST00000477757

Name

PDLIM1-202

Strand

Biotype

processed_transcript

Start-end positions

95238010-95291012

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:2067

Aliases

CLIM1,
CLP-36, CLP36, ENSG00000107438,
hCLIM1, HGNC:2067, NCBI:9124,
OFF:PDLIM1, PDLIM1

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
95926	42	CTG ...	LLP ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
95934	99	CTG ...	LAS ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
95912	30	ATG ...	MCA ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
404881	198	GGG ...	GPG ...	Ribo-seq	GGG		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
631152	48	CTG ...	LPV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	ncRNA sORF	MDA-MB-231, MM1S, THP-1
95940	198	CTG ...	LHI ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1
95919	69	GTG ...	VAA ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
95936	150	CTG ...	LPP ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, LCL, RPE-1
281874	90	GTG ...	VGL ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	BJ, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
95930	60	ATG ...	MPW ...	Ribo-seq	ATG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
633185	198	GTG ...	VPC ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
631154	69	CTG ...	LQA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	ncRNA sORF	MDA-MB-231, MM1S, THP-1
95928	51	CTG ...	LES ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
95915	39	CTG ...	LSV ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
404874	42	TGG ...	WCV ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
95924	39	CTG ...	LPA ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
276759	135	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF, LCL, RPE-1
3199504	45	GCC ...	ATL ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
1313403	90	GTG ...	VGG ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HFF
633183	186	CTG ...	LFR ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
95917	39	TTG ...	LPM ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S
95938	174	GTG ...	VPC ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF, LCL, RPE-1
95932	84	CTG ...	LKI ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3199502	123	GGC ...	GTN ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	HEK293

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