Transcript 4824 | MetamORF

Transcript

ID CARD

MetamORF ID

4824

ENST00000477596

Name

SF1-214

Strand

Biotype

retained_intron

Start-end positions

64766414-64767646

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:12950

Aliases

ENSG00000168066,
HGNC:12950, NCBI:7536, OFF:SF1,
SF1, ZCCHC25, ZFM1,
ZNF162

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
909081	33	AGT ...	STP ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
407997	93	AGT ...	STW ...	Ribo-seq	AGT		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
909091	180	CCG ...	PPP ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
909089	165	TAT ...	YGH ...	Ribo-seq	TAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
3016980	117	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	hES, MM1S
909087	75	GCA ...	AAA ...	Ribo-seq	GCA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
909095	96	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
482551	75	CTG ...	LWA ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HEK293T, hES, MM1S
909093	87	TGG ...	WEV ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
909085	45	CAG ...	QQY ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
909083	39	GCT ...	ASS ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
4823	78	TTG ...	LDA ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1632995	66	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, MM1S

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