Transcript 1674 | MetamORF

Transcript

ID CARD

MetamORF ID

1674

ENST00000474993

Name

NPM3-204

Strand

Biotype

processed_transcript

Start-end positions

101781332-101783384

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:7931

Aliases

ENSG00000107833,
HGNC:7931, NCBI:10360, NPM3,
OFF:NPM3

Chr 10

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1673	168	CTG ...	LKS ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
98407	108	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1790	207	CTG ...	LDD ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
406233	189	CAA ...	QPP ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
902234	129	CAC ...	HQI ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
898343	120	CGC ...	RRY ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1787	147	GTG ...	VRI ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1
406231	162	TCG ...	SGS ...	Ribo-seq	TCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
406297	132	GTT ...	VFE ...	Ribo-seq	GTT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

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