Transcript 94501 | MetamORF

Transcript

ID CARD

MetamORF ID

94501

ENST00000472202

Name

ATP5C1-207

Strand

Biotype

retained_intron

Start-end positions

7788210-7799550

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:833

Aliases

ATP5C,
ATP5C1, ATP5CL1, ATP5F1C,
ENSG00000165629, HGNC:833, NCBI:509,
OFF:ATP5F1C

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
272782	60	GTG ...	VTK ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	LCL
893273	123	GCA ...	AAA ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
893269	144	TGG ...	WAV ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
893271	135	GGC ...	GLD ...	Ribo-seq	GGC		1	sORFs_org_Human	Intronic sORF	Jurkat
94505	30	TTG ...	LGS ...	Ribo-seq	TTG		16	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, MM1S
94513	30	GTG ...	VWC ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, RPE-1
3068703	90	CTG ...	LKT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	MM1S
94509	114	ATG ...	MKK ...	Ribo-seq	ATG	weak	11	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, HFF, LCL, loayza_puch_2016, MM1S
1128288	147	GTG ...	VSS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
403951	222	TTC ...	FSR ...	Ribo-seq	TTC		8	sORFs_org_Human	Intronic sORF	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
893281	33	AAT ...	NGS ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1437652	39	TTG ...	LKD ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
893275	33	TCA ...	SSS ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
893277	51	AAT ...	NYQ ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
403953	75	TAT ...	YAR ...	Ribo-seq	TAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
94500	54	CTG ...	LKP ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1128290	129	CTG ...	LCG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
272769	141	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, LCL, MM1S
94507	207	CTG ...	LYE ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MM1S
272771	135	TTG ...	LFV ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, LCL, MM1S
893279	42	GTC ...	VYE ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
272778	69	TTG ...	LEL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
272774	105	CTG ...	LIS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HFF, LCL, loayza_puch_2016, MM1S
403955	69	CGA ...	RAE ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	HCT116
272780	63	TTG ...	LVT ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Intronic sORF	HeLa, LCL
2902146	159	TTG ...	LHI ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa

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