Transcript 1652 | MetamORF

Transcript

ID CARD

MetamORF ID

1652

ENST00000471741

Name

GOT1-202

Strand

Biotype

processed_transcript

Start-end positions

99420267-99430624

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:4432

Aliases

AST1,
ENSG00000120053, GOT1, HGNC:4432,
NCBI:2805, OFF:GOT1

Chr 10

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1202646	45	TTG ...	LPL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, hES, MDA-MB-231, RPE-1
406204	207	GGA ...	GVG ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	HCT116
1202648	57	GTG ...	VLL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
96096	87	CTG ...	LAE ...	Ribo-seq	CTG	strong	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
277250	45	CTG ...	LGF ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
96108	66	CTG ...	LPT ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
277252	54	CTG ...	LPS ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1202644	39	TTG ...	LGM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, MDA-MB-231, RPE-1
1500578	33	ATG ...	MTA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
406206	249	GCC ...	ADF ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1651	204	GTG ...	VGA ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404963	120	GGC ...	GTS ...	Ribo-seq	GGC		6	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
277255	87	CTG ...	LSW ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
96098	93	CTG ...	LGL ...	Ribo-seq	CTG	strong	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
934511	111	TTG ...	LPR ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
898028	141	CAG ...	QKI ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
96102	147	GTG ...	VEQ ...	Ribo-seq	GTG	strong	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
934513	150	TTG ...	LIP ...	Ribo-seq	TTG		14	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1
1654	210	CTG ...	LGV ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
96100	102	CTG ...	LPI ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
98218	30	ATG ...	MTA ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1
96094	30	CTG ...	LCF ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
934508	177	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Brain
1134080	39	CTG ...	LTC ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
96104	156	GTG ...	VKK ...	Ribo-seq	GTG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
404961	159	GCC ...	ADF ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
277242	72	CTG ...	LSS ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1656	267	CTG ...	LVF ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
96106	165	TTG ...	LPV ...	Ribo-seq	TTG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS

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