Transcript 1788 | MetamORF

Transcript

ID CARD

MetamORF ID

1788

ENST00000468544

Name

NPM3-203

Strand

Biotype

processed_transcript

Start-end positions

101781727-101782648

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:7931

Aliases

ENSG00000107833,
HGNC:7931, NCBI:10360, NPM3,
OFF:NPM3

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
902262	204	GAT ...	DDF ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
405106	78	GAG ...	EEE ...	Ribo-seq	GAG	strong	1	sORFs_org_Human	ncRNA sORF	HCT116
98403	117	GTG ...	VAR ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF
898326	48	GAG ...	ELC ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
405112	150	GGA ...	GAK ...	Ribo-seq	GGA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
405110	99	TCT ...	SEE ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	ncRNA sORF	HCT116
480772	63	ATG ...	MTI ...	Ribo-seq	ATG		15	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
96242	39	CTG ...	LWP ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
406231	162	TCG ...	SGS ...	Ribo-seq	TCG		1	sORFs_org_Human	ncRNA sORF	HCT116
405104	63	GAT ...	DEE ...	Ribo-seq	GAT	strong	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
98405	129	GTG ...	VVE ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, HFF
1673	168	CTG ...	LKS ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, MM1S, RPE-1, U2OS
1438406	78	GTG ...	VAN ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
898329	60	CTT ...	LPP ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
98401	45	CTG ...	LCP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
480774	78	TTG ...	LWP ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
1787	147	GTG ...	VRI ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, HFF, MM1S, RPE-1, U2OS
480777	33	CTG ...	LPH ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293T, hES
405108	90	GAG ...	ESE ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	ncRNA sORF	HCT116
406233	189	CAA ...	QPP ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	HCT116
1790	207	CTG ...	LDD ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1

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