Transcript 5660 | MetamORF

Transcript

ID CARD

MetamORF ID

5660

ENST00000467591

Name

GSTP1-203

Strand

Biotype

retained_intron

Start-end positions

67584795-67586569

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:4638

Aliases

ENSG00000084207,
FAEES3, GST3, GSTP,
GSTP1, HGNC:4638, NCBI:2950,
OFF:GSTP1

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
408348	192	GGG ...	GKD ...	Ribo-seq	GGG		4	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
5664	42	ATG ...	MVV ...	Ribo-seq	ATG		17	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S
288290	48	GTG ...	VPG ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5689	87	CTG ...	LPG ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
288288	63	ATG ...	MWG ...	Ribo-seq	ATG	weak	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1306669	111	CCC ...	PLL ...	Ribo-seq	CCC		2	sORFs_org_Human	Intronic sORF	Breast, HEK293
910373	102	TCA ...	SAY ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
408353	114	TTC ...	FPL ...	Ribo-seq	TTC		4	sORFs_org_Human	Intronic sORF	HCT116, HeLa, Jurkat, THP-1
1008793	144	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HeLa
5670	36	GTG ...	VSG ...	Ribo-seq	GTG		25	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
938505	165	GTG ...	VDM ...	Ribo-seq	GTG		6	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa
5693	87	ATG ...	MRS ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5662	60	ATG ...	MTA ...	Ribo-seq	ATG		30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1306667	51	TGG ...	WRT ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Breast
1310034	138	CTA ...	LAP ...	Ribo-seq	CTA		1	sORFs_org_Human	Intronic sORF	HEK293
408355	30	CTC ...	LPI ...	Ribo-seq	CTC		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
2616490	126	TGC ...	CLD ...	Ribo-seq	TGC		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1
5687	99	CTG ...	LAA ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1048231	72	CTG ...	LLP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HEK293T, HeLa
1008790	156	GTG ...	VND ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa
938503	168	CTG ...	LVD ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa
910376	36	CCG ...	PAQ ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
408346	198	CTC ...	LYG ...	Ribo-seq	CTC		5	sORFs_org_Human	Intronic sORF	Breast, HCT116, HeLa, Jurkat, THP-1
5668	39	GTG ...	VVS ...	Ribo-seq	GTG		20	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, U2OS
5659	42	ATG ...	MGR ...	Ribo-seq	ATG	moderate	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616486	141	GAG ...	EDL ...	Ribo-seq	GAG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1

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