Transcript 96265 | MetamORF

Transcript

ID CARD

MetamORF ID

96265

ENST00000465617

Name

DHTKD1-205

Strand

Biotype

processed_transcript

Start-end positions

12081524-12097958

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:23537

Aliases

CMT2Q,
DHTKD1, DKFZP762M115, ENSG00000181192,
HGNC:23537, KIAA1630, MGC3090,
NCBI:55526, OFF:DHTKD1

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
96277	144	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
1132630	189	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
1132632	171	CTG ...	LAF ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
272930	51	GTG ...	VNF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
272928	60	TTG ...	LRN ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
96269	84	CTG ...	LQK ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, hES
96281	234	GTG ...	VGC ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
96264	225	TTG ...	LNM ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, hES
893407	177	CCA ...	PSP ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1132636	120	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
96275	198	GTG ...	VKR ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
272922	129	GTG ...	VGR ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
96267	189	GTG ...	VLV ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, hES
1132634	135	GTG ...	VII ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
96279	141	CTG ...	LKM ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
272926	72	TTG ...	LPS ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
2950491	123	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
96271	45	CTG ...	LSK ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HAP1, HEK293
96273	219	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
2295113	114	TTG ...	LKP ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
272924	87	ATG ...	MRK ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231

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