Transcript 96018 | MetamORF

Transcript

ID CARD

MetamORF ID

96018

ENST00000464654

Name

TM9SF3-203

Strand

Biotype

processed_transcript

Start-end positions

96553024-96577542

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:21529

Aliases

ENSG00000077147,
HGNC:21529, NCBI:56889, OFF:TM9SF3,
SMBP, TM9SF3

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
98098	57	CTG ...	LVP ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, hES, HFF, RPE-1, U2OS
98093	42	TTG ...	LTN ...	Ribo-seq	TTG		14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
98100	63	GTG ...	VKL ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, hES, HFF, RPE-1, U2OS
1129061	30	ATG ...	MEI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, RPE-1
98102	42	ATG ...	MIY ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293
404907	66	AAG ...	KVK ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	HCT116
897782	111	TAC ...	YQM ...	Ribo-seq	TAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
98095	54	TTG ...	LKI ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
96017	69	GTG ...	VKF ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404905	78	AAG ...	KSD ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	HCT116
404909	141	CTT ...	LWT ...	Ribo-seq	CTT		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
897780	120	GAA ...	EIG ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
897788	165	TTA ...	LDK ...	Ribo-seq	TTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
631240	30	TTG ...	LIR ...	Ribo-seq	TTG		15	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
897786	54	TGC ...	CIC ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
98104	195	GTG ...	VMP ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, hES, HFF
897776	39	CTT ...	LDP ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897790	177	TGT ...	CEI ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897778	45	ACT ...	TKI ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1133983	51	ATG ...	MKK ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	BJ, HEK293

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