Transcript 10749 | MetamORF

Transcript

ID CARD

MetamORF ID

10749

ENST00000464283

Name

CTPS1-205

Strand

Biotype

processed_transcript

Start-end positions

41001539-41009589

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:2519

Aliases

CTPS,
CTPS1, ENSG00000171793, GATD5,
HGNC:2519, NCBI:1503, OFF:CTPS1

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10751	123	GTG ...	VLV ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
411182	171	TTA ...	LGM ...	Ribo-seq	TTA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
921538	45	AGC ...	SNC ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
921526	87	GAA ...	EGK ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
921524	63	AAC ...	NRR ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2055993	171	GTG ...	VEC ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
10753	120	CTG ...	LVP ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
10755	36	CTG ...	LGS ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
411192	66	GGA ...	GCS ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	HCT116
921565	33	ATT ...	ILK ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
411180	114	CCA ...	PGG ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	HCT116
301134	48	TTG ...	LNS ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, THP-1
10748	105	GTG ...	VQW ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
108111	120	GTG ...	VVC ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, THP-1, U2OS
301132	30	GTG ...	VLR ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	ncRNA sORF	BJ, LCL, MDA-MB-231, RPE-1

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