Transcript 215 | MetamORF

Transcript

ID CARD

MetamORF ID

215

ENST00000462899

Name

SMC3-202

Strand

Biotype

processed_transcript

Start-end positions

110568327-110582006

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

HGNC:2468

Aliases

BAM,
bamacan, CSPG6, ENSG00000108055,
HCAP, HGNC:2468, NCBI:9126,
OFF:SMC3, SMC3, SMC3L1

Chr 10

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
631668	51	CTG ...	LLL ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
405268	147	CTA ...	LLR ...	Ribo-seq	CTA		1	sORFs_org_Human	ncRNA sORF	HCT116
898940	75	ACA ...	TIV ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
898944	90	TTT ...	FVL ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1134447	90	TTG ...	LFL ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, RPE-1
278272	51	TTG ...	LYF ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, LCL
98669	99	GTG ...	VMN ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, THP-1
1313903	120	ATG ...	MLI ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
898942	45	AAT ...	NVI ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1134449	84	TTG ...	LYF ...	Ribo-seq	TTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
898950	72	GTA ...	VLV ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
217	54	GTG ...	VMS ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
221	30	TTG ...	LVP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
898938	90	AGT ...	SYR ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
214	63	TTG ...	LFS ...	Ribo-seq	TTG		17	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
898936	30	TTC ...	FEV ...	Ribo-seq	TTC	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
898955	33	CAG ...	QYF ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
405264	42	GCT ...	ALL ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	HCT116
898948	54	GAA ...	EQR ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
898957	90	CTC ...	LLE ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1093131	48	CTG ...	LVL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, MDA-MB-231
2952845	42	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
898959	60	AAT ...	NPY ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
898946	36	TCC ...	SRT ...	Ribo-seq	TCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
631666	60	GTG ...	VLF ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
278274	42	TTG ...	LKF ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, LCL
1202975	105	GTG ...	VGW ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa
631664	69	CTG ...	LVL ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
223	33	ATG ...	MTN ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, hES, MDA-MB-231
2303046	51	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	hES, MDA-MB-231
898961	36	ACA ...	TRK ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat
405270	120	GTG ...	VYD ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HCT116
405266	54	GTT ...	VIG ...	Ribo-seq	GTT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
2092161	48	ATG ...	MDL ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
219	51	ATG ...	MSL ...	Ribo-seq	ATG		19	sORFs_org_Human	ncRNA sORF	Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
480864	45	TTG ...	LWR ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, THP-1
98666	30	TTG ...	LII ...	Ribo-seq	TTG		16	sORFs_org_Human	ncRNA sORF	Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
98671	60	TTG ...	LKA ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
98660	111	GTG ...	VII ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, RPE-1
98664	78	GTG ...	VEI ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293

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