Transcript 97966 | MetamORF

Transcript

ID CARD

MetamORF ID

97966

ENST00000461562

Name

NOC3L-202

Strand

Biotype

processed_transcript

Start-end positions

94361324-94362959

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

HGNC:24034

Aliases

AD24,
C10orf117, ENSG00000173145, FAD24,
FLJ12820, HGNC:24034, NCBI:64318,
NOC3L, OFF:NOC3L

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897561	30	GGA ...	GEP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
897563	45	GAA ...	ETH ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
480673	39	CTG ...	LVN ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
1133903	45	CTG ...	LLL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1
902162	36	GGA ...	GEP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
902160	51	GAA ...	ETH ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
406182	258	GCG ...	ARR ...	Ribo-seq	GCG		1	sORFs_org_Human	ncRNA sORF	HCT116
897574	78	CGT ...	RVS ...	Ribo-seq	CGT	strong	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
897566	102	GCT ...	AVK ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
902156	111	GCT ...	AVK ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
901924	240	CAG ...	QIP ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1500279	30	TTG ...	LSG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MDA-MB-231, RPE-1
404863	87	GTG ...	VSK ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, hES, Jurkat
897576	102	TCT ...	SGS ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
1133900	36	GTG ...	VNL ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1
902158	153	ACT ...	TLK ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897572	42	CTT ...	LLV ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1133905	75	GTG ...	VSF ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231, MM1S, RPE-1
97965	99	GTG ...	VKD ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES
897570	231	CAG ...	QIP ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
897568	144	ACT ...	TLK ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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