Transcript 1399 | MetamORF

Transcript

ID CARD

MetamORF ID

1399

ENST00000460899

Name

COMTD1-202

Strand

Biotype

processed_transcript

Start-end positions

75233971-75235730

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:26309

Aliases

COMTD1,
ENSG00000165644, FLJ23841, HGNC:26309,
NCBI:118881, OFF:COMTD1

Chr 10

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1733	243	GTG ...	VVD ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, U2OS
100051	141	CTG ...	LGT ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, U2OS
1735	291	CTG ...	LDE ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, U2OS
100057	186	TTG ...	LAN ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, U2OS
1729	249	GTG ...	VAV ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, U2OS
100061	243	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, U2OS
1725	240	GTG ...	VDA ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, U2OS
100063	267	GTG ...	VPP ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
1727	279	CTG ...	LAA ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, U2OS
100053	147	CTG ...	LDL ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, U2OS
1737	282	CTG ...	LLA ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, U2OS
526216	300	TTG ...	LET ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231, MM1S, U2OS
1398	186	CTG ...	LRP ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, U2OS
1731	195	CTG ...	LQL ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, U2OS
100055	177	CTG ...	LAR ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, U2OS
1401	189	CTG ...	LLR ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, U2OS
100065	270	CTG ...	LVP ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
100059	237	CTG ...	LEQ ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231, U2OS

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