Transcript 196 | MetamORF

Transcript

ID CARD

MetamORF ID

196

ENST00000460483

Name

SMNDC1-203

Strand

Biotype

processed_transcript

Start-end positions

110295230-110304906

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:16900

Aliases

ENSG00000119953,
HGNC:16900, NCBI:10285, OFF:SMNDC1,
SMNDC1, SMNR, SPF30,
TDRD16C

Chr 10

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1719694	39	TTG ...	LPS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231
766	216	TTG ...	LLK ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, HFF
195	72	TTG ...	LNL ...	Ribo-seq	TTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
768	285	CTG ...	LAS ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1
212	120	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
200	84	GTG ...	VTP ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
898905	39	AGT ...	SEM ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
762	162	CTG ...	LST ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, HFF, LCL
764	207	TTG ...	LKK ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF
1093120	30	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
198	75	CTG ...	LLN ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1719692	33	ATG ...	MAT ...	Ribo-seq	ATG	strong	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
278242	30	TTG ...	LSR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	BJ, HeLa, LCL, U2OS
524801	33	ATG ...	MQK ...	Ribo-seq	ATG		8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, RPE-1, U2OS

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