Transcript 2089 | MetamORF

Transcript

ID CARD

MetamORF ID

2089

ENST00000449825

Name

CHID1-204

Strand

Biotype

protein_coding

Start-end positions

867860-915058

CDS Start-stop positions

869858-904816

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:28474

Aliases

CHID1,
ENSG00000177830, FLJ42707, HGNC:28474,
MGC3234, NCBI:66005, OFF:CHID1,
SI-CLP

Chr 11

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
917149	147	TCT ...	SST ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
526632	96	GTG ...	VEQ ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
941682	30	TTG ...	LSG ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, MDA-MB-231, RPE-1
534857	156	TTG ...	LSI ...	Ribo-seq	TTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282197	33	CTG ...	LGM ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
2088	45	TTG ...	LGA ...	Ribo-seq	TTG	moderate	24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
295736	45	ATG ...	MPV ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
295734	39	GTG ...	VSL ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
282189	69	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, LCL
534814	93	CTG ...	LPS ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, MDA-MB-231, RPE-1, THP-1, U2OS
1503696	63	GTG ...	VRC ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa
295758	87	GTG ...	VRC ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
2097	36	TTG ...	LLG ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
534869	129	TTG ...	LPW ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
526634	81	TTG ...	LSI ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
633447	33	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, RPE-1, THP-1
295760	93	GTG ...	VAV ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
526619	102	CTG ...	LRP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
2095	69	ATG ...	MAT ...	Ribo-seq	ATG	strong	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903279	87	CCA ...	PWL ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
100741	39	TTG ...	LRT ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903273	42	ATT ...	ISM ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
295762	111	TTG ...	LLG ...	Ribo-seq	TTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903275	33	ACT ...	TGL ...	Ribo-seq	ACT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282200	42	ATG ...	MPK ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, hES, HFF, LCL, MDA-MB-231, RPE-1
282187	48	GTG ...	VDA ...	Ribo-seq	GTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
633471	69	CTG ...	LFT ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, MDA-MB-231, RPE-1, THP-1
633469	96	CTG ...	LRV ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
295764	84	ATG ...	MPK ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
638886	222	ATG ...	MCS ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, MDA-MB-231, RPE-1, THP-1
638872	75	ATG ...	MSH ...	Ribo-seq	ATG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, RPE-1, THP-1
633453	42	TTG ...	LSS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, RPE-1, THP-1
282184	36	ATG ...	MAS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
534859	165	GTG ...	VWF ...	Ribo-seq	GTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
534871	171	GTG ...	VTH ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, MDA-MB-231, RPE-1, THP-1, U2OS
633457	33	CTG ...	LSG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, MDA-MB-231, RPE-1, THP-1
3015582	99	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MM1S
534861	171	CTG ...	LRV ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903277	72	CAC ...	HQG ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903281	105	TCT ...	SST ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
633475	87	TTG ...	LPW ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, MDA-MB-231, RPE-1, THP-1
526636	90	GTG ...	VWF ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903265	129	GTA ...	VWT ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282191	30	CTG ...	LAA ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HCT116, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
633481	141	TTG ...	LDP ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, MDA-MB-231, RPE-1, THP-1
917116	69	GTA ...	VWT ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
917151	159	CCA ...	PCG ...	Ribo-seq	CCA		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, THP-1
2093	60	ATG ...	MSP ...	Ribo-seq	ATG	moderate	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1298964	78	TTG ...	LRS ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, MDA-MB-231, RPE-1
295738	72	ATG ...	MVW ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
633473	96	CTG ...	LQP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1, THP-1
534793	162	ATG ...	MHP ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1, U2OS
903283	117	CCA ...	PCG ...	Ribo-seq	CCA		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, THP-1
534816	138	TTG ...	LQG ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, MM1S, THP-1, U2OS
633449	72	GTG ...	VAK ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
903267	48	GCT ...	AQL ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
534873	183	TTG ...	LDP ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, MDA-MB-231, RPE-1, THP-1, U2OS
903271	93	GGT ...	GPG ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
526621	114	CTG ...	LGS ...	Ribo-seq	CTG	strong	9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
534854	108	CTG ...	LGM ...	Ribo-seq	CTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
534867	111	CTG ...	LFT ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
534795	171	CTG ...	LAL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
633479	129	GTG ...	VTH ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HEK293T, MDA-MB-231, RPE-1, THP-1
638830	33	CTG ...	LLS ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
633477	111	CTG ...	LAC ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1, THP-1

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