Transcript 96015 | MetamORF

Transcript

ID CARD

MetamORF ID

96015

ENST00000443638

Name

TM9SF3-202

Strand

Biotype

protein_coding

Start-end positions

96551311-96587452

CDS Start-stop positions

-96576799

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

HGNC:21529

Aliases

ENSG00000077147,
HGNC:21529, NCBI:56889, OFF:TM9SF3,
SMBP, TM9SF3

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
524366	30	ATG ...	MET ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1503172	48	TTG ...	LNW ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	BJ, HEK293
1296662	33	GTG ...	VVW ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HEK293, HEK293T
524363	36	ATG ...	MEM ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, U2OS
1296668	168	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293T, MDA-MB-231
2421929	111	GTG ...	VWG ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HEK293, HFF
524361	30	ATG ...	MYL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, U2OS
524373	105	TTG ...	LVF ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	sORF	Blood, MDA-MB-231, RPE-1, THP-1, U2OS
524370	60	ATG ...	MNM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	MDA-MB-231, U2OS
1296666	165	TTG ...	LGP ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HEK293T, MDA-MB-231
96014	42	ATG ...	MLG ...	Ribo-seq	ATG		17	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1296664	78	ATG ...	MKL ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HeLa, HFF, RPE-1
524368	54	ATG ...	MDG ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	sORF	MDA-MB-231, U2OS

Export data