Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

666

ID

ENST00000439817

Name

MGEA5-205

Strand

-

Biotype

protein_coding

Start-end positions

101784443-101818465

CDS Start-stop positions

101786451-101818022

CDS Relative positions

-

Sequences

Transcript sequence

GGT ...

Gene

ID

HGNC:7056

Aliases

ENSG00000198408,
HGNC:7056, MEA5, MGEA5,
NCBI:10724, NCOAT, OFF:OGA,
OGA


Chr 10

ORFs

114 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1817079 33

TTG ...

LIV ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
279375 60

ATG ...

MTM ...

Ribo-seq
ATG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
277665 72

ATG ...

MKN ...

Ribo-seq
ATG weak 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
277643 129

CTG ...

LIY ...

Ribo-seq
CTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
98409 45

CTG ...

LDP ...

Ribo-seq
CTG moderate 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
96257 36

TTG ...

LAR ...

Ribo-seq
TTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
1719357 48

CTG ...

LDW ...

Ribo-seq
CTG moderate 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
277651 72

ATG ...

MNR ...

Ribo-seq
ATG weak 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
96255 51

TTG ...

LKN ...

Ribo-seq
TTG moderate 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
99358 57

CTG ...

LEL ...

Ribo-seq
CTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
279369 33

GTG ...

VTR ...

Ribo-seq
GTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, LCL,
MDA-MB-231, RPE-1
277663 36

GTG ...

VKL ...

Ribo-seq
GTG weak 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL, MDA-MB-231
277631 57

TTG ...

LGY ...

Ribo-seq
TTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
U2OS
279390 51

CTG ...

LVQ ...

Ribo-seq
CTG 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
277678 48

CTG ...

LLS ...

Ribo-seq
CTG weak 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1, THP-1
99356 51

TTG ...

LKC ...

Ribo-seq
TTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
277637 42

TTG ...

LSV ...

Ribo-seq
TTG 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231
277624 30

ATG ...

MIS ...

Ribo-seq
ATG weak 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HEK293, hES,
LCL, MDA-MB-231
898373 48

AGG ...

RRA ...

Ribo-seq
AGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
2302014 42

TTG ...

LLS ...

Ribo-seq
TTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, hES, MDA-MB-231
277655 90

TTG ...

LPP ...

Ribo-seq
TTG moderate 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
1817083 69

CTG ...

LVM ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
279373 54

ATG ...

MEW ...

Ribo-seq
ATG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
2305170 210

CTG ...

LPP ...

Ribo-seq
CTG 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
hES, MDA-MB-231, RPE-1
277653 75

CTG ...

LMN ...

Ribo-seq
CTG moderate 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
98416 39

ATG ...

MGI ...

Ribo-seq
ATG strong 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, MDA-MB-231
2678737 297

GTG ...

VPQ ...

Ribo-seq
GTG 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
RPE-1
277628 42

TTG ...

LMG ...

Ribo-seq
TTG weak 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, THP-1
277614 30

GTG ...

VTR ...

Ribo-seq
GTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
RPE-1
277674 72

ATG ...

MIM ...

Ribo-seq
ATG weak 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1
898353 60

TGT ...

CLG ...

Ribo-seq
TGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
277641 102

ATG ...

MDP ...

Ribo-seq
ATG 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1
277649 48

TTG ...

LCQ ...

Ribo-seq
TTG moderate 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
277647 33

ATG ...

MKS ...

Ribo-seq
ATG weak 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
934631 42

ATG ...

MPK ...

Ribo-seq
ATG weak 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Brain, HAP1, HEK293,
hES, MDA-MB-231
898351 30

GGT ...

GEV ...

Ribo-seq
GGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
898359 54

GAT ...

DGN ...

Ribo-seq
GAT strong 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
279367 30

ATG ...

MAP ...

Ribo-seq
ATG 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, hES,
LCL, MDA-MB-231
898380 117

AAG ...

KMT ...

Ribo-seq
AAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
277645 132

TTG ...

LLI ...

Ribo-seq
TTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
279404 138

CTG ...

LGE ...

Ribo-seq
CTG 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, hES, LCL,
MDA-MB-231
277661 30

TTG ...

LLK ...

Ribo-seq
TTG moderate 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL, MDA-MB-231
668 66

ATG ...

MED ...

Ribo-seq
ATG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
279397 78

ATG ...

MPQ ...

Ribo-seq
ATG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
900372 69

AAG ...

KMT ...

Ribo-seq
AAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
277639 45

GTG ...

VLS ...

Ribo-seq
GTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL, MDA-MB-231
898349 33

GAT ...

DKD ...

Ribo-seq
GAT weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
279379 90

TTG ...

LSV ...

Ribo-seq
TTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
277667 75

CTG ...

LMK ...

Ribo-seq
CTG moderate 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
665 33

TTG ...

LAR ...

Ribo-seq
TTG 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, U2OS
279385 177

CTG ...

LIY ...

Ribo-seq
CTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
96244 39

ATG ...

MWL ...

Ribo-seq
ATG moderate 8 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Blood, HEK293, HeLa,
LCL, MDA-MB-231, MM1S,
RPE-1
99360 72

GTG ...

VKS ...

Ribo-seq
GTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
277684 63

GTG ...

VCS ...

Ribo-seq
GTG weak 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
1817077 39

TTG ...

LDQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
277608 72

TTG ...

LKL ...

Ribo-seq
TTG moderate 11 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1
898367 42

GCC ...

AYY ...

Ribo-seq
GCC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1817085 84

GTG ...

VLC ...

Ribo-seq
GTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
279381 93

GTG ...

VLS ...

Ribo-seq
GTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
277676 78

ATG ...

MLM ...

Ribo-seq
ATG weak 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1
1719359 60

ATG ...

MRS ...

Ribo-seq
ATG weak 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231, RPE-1
279383 150

ATG ...

MDP ...

Ribo-seq
ATG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
898382 159

CGA ...

RAQ ...

Ribo-seq
CGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
900365 120

CTA ...

LSD ...

Ribo-seq
CTA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
279402 114

CTG ...

LQE ...

Ribo-seq
CTG 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, hES, LCL,
MDA-MB-231, RPE-1
277672 66

ATG ...

MIR ...

Ribo-seq
ATG moderate 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
96253 66

GTG ...

VWT ...

Ribo-seq
GTG moderate 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
1817081 63

ATG ...

MNI ...

Ribo-seq
ATG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
98411 39

ATG ...

MTC ...

Ribo-seq
ATG weak 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
MDA-MB-231, MM1S, RPE-1
277680 45

GTG ...

VAL ...

Ribo-seq
GTG strong 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231
277682 60

CTG ...

LWH ...

Ribo-seq
CTG moderate 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
98414 30

TTG ...

LHT ...

Ribo-seq
TTG moderate 12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
1129143 33

ATG ...

MAY ...

Ribo-seq
ATG strong 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, MDA-MB-231, RPE-1
277620 57

ATG ...

MEW ...

Ribo-seq
ATG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
277626 39

ATG ...

MGQ ...

Ribo-seq
ATG moderate 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231
279395 66

ATG ...

MTT ...

Ribo-seq
ATG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
279387 180

TTG ...

LLI ...

Ribo-seq
TTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
898361 72

CTA ...

LPS ...

Ribo-seq
CTA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
277606 66

TTG ...

LQK ...

Ribo-seq
TTG moderate 10 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
277616 33

ATG ...

MVT ...

Ribo-seq
ATG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1
96251 60

GTG ...

VPT ...

Ribo-seq
GTG moderate 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, MDA-MB-231, MM1S,
RPE-1
279400 84

GTG ...

VWW ...

Ribo-seq
GTG 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
898363 36

CAA ...

QMK ...

Ribo-seq
CAA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
277610 36

ATG ...

MIK ...

Ribo-seq
ATG weak 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
96259 33

TTG ...

LGY ...

Ribo-seq
TTG strong 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, LCL, MDA-MB-231,
RPE-1
898386 288

CGG ...

RTE ...

Ribo-seq
CGG 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
934633 48

TTG ...

LLM ...

Ribo-seq
TTG weak 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Brain, HAP1, HEK293,
hES, MDA-MB-231
898377 30

GAC ...

DSH ...

Ribo-seq
GAC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1129145 39

ATG ...

MKM ...

Ribo-seq
ATG moderate 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, MDA-MB-231, RPE-1
277622 63

ATG ...

MTM ...

Ribo-seq
ATG 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
898357 63

ATT ...

IVP ...

Ribo-seq
ATT moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
279377 84

GTG ...

VSI ...

Ribo-seq
GTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
898365 93

ACA ...

TLP ...

Ribo-seq
ACA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
96249 39

TTG ...

LET ...

Ribo-seq
TTG moderate 12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, U2OS
898384 279

GTC ...

VEE ...

Ribo-seq
GTC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
277635 36

GTG ...

VSI ...

Ribo-seq
GTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231
277618 45

ATG ...

MWL ...

Ribo-seq
ATG weak 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231
2092046 63

GTG ...

VNL ...

Ribo-seq
GTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, hES, MDA-MB-231
2305168 201

CTG ...

LRG ...

Ribo-seq
CTG 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
hES, MDA-MB-231, RPE-1
405118 60

GGT ...

GGG ...

Ribo-seq
GGT strong 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
HCT116
99362 78

CTG ...

LWV ...

Ribo-seq
CTG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1
898388 288

GCC ...

ALS ...

Ribo-seq
GCC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
1719315 54

ATG ...

MKN ...

Ribo-seq
ATG weak 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, hES, MDA-MB-231
277657 96

GTG ...

VTL ...

Ribo-seq
GTG weak 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
277670 51

CTG ...

LVQ ...

Ribo-seq
CTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231, RPE-1,
U2OS
898347 33

GAT ...

DGL ...

Ribo-seq
GAT moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
279371 36

ATG ...

MVT ...

Ribo-seq
ATG 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, LCL,
MDA-MB-231, RPE-1
1719355 39

TTG ...

LGA ...

Ribo-seq
TTG strong 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
1817087 48

ATG ...

MVT ...

Ribo-seq
ATG strong 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
898371 42

GCC ...

ARN ...

Ribo-seq
GCC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
2092044 57

TTG ...

LKP ...

Ribo-seq
TTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, hES, MDA-MB-231
1202814 78

GTG ...

VQQ ...

Ribo-seq
GTG weak 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, MDA-MB-231
898355 30

ACT ...

TPM ...

Ribo-seq
ACT weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
277659 141

CTG ...

LNQ ...

Ribo-seq
CTG weak 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS