Transcript 481138

Transcript

ID CARD

MetamORF ID

481138

ENST00000436547

Name

TIAL1-205

Strand

Biotype

protein_coding

Start-end positions

119575437-119596510

CDS Start-stop positions

119575665-119596465

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:11804

Aliases

ENSG00000151923,
HGNC:11804, NCBI:7073, OFF:TIAL1,
TIAL1, TIAR

Chr 10

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2305875	174	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
481137	111	TTG ...	LFY ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T
278686	42	ATG ...	MWL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2305873	156	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
480958	33	ATG ...	MKV ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2305867	117	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2305865	111	TTG ...	LCI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, HFF, MDA-MB-231
1129332	66	ATG ...	MGG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2303719	69	TTG ...	LDG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
900667	42	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2305863	84	GTG ...	VVV ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, MDA-MB-231
1719910	138	TTG ...	LTI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
2305877	36	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
524912	45	ATG ...	MEY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, U2OS
2305871	150	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1129334	84	ATG ...	MDS ...	Ribo-seq	ATG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2305869	126	ATG ...	MQK ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
1296391	51	TTG ...	LSD ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
2303721	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2953586	42	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
1129336	102	ATG ...	MET ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
360	57	ATG ...	MTH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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