Transcript 4054798

Transcript

ID CARD

MetamORF ID

4054798

ENST00000424085

Name

PUM1-205

Strand

Biotype

protein_coding

Start-end positions

30931506-31065695

CDS Start-stop positions

30933211-31059566

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:14957

Aliases

ENSG00000134644,
HGNC:14957, KIAA0099, NCBI:9698,
OFF:PUM1, PUM1, PUMH1

Chr 1

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1822939	45	ATG ...	MYW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1822922	30	ATG ...	MYP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
2322991	75	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
481536	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
286803	45	ATG ...	MQA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3263	81	ATG ...	MCL ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
286745	225	ATG ...	MAV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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