Transcript 3645 | MetamORF

Transcript

ID CARD

MetamORF ID

3645

ENST00000422974

Name

ZFP91-CNTF-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

58609979-58624639

CDS Start-stop positions

-58622749

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:33441

Aliases

ENSG00000255073,
HGNC:33441, NCBI:386607, OFF:ZFP91-CNTF,
ZFP91-CNTF

Chr 11

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1821087	45	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
907394	117	CCC ...	PIP ...	Ribo-seq	CCC		1	sORFs_org_Human	NMD sORF	Jurkat
1821105	48	GTG ...	VFF ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	HeLa
1821089	39	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	HeLa
3644	219	TTG ...	LGN ...	Ribo-seq	TTG		15	sORFs_org_Human	NMD sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907390	135	AGA ...	RRN ...	Ribo-seq	AGA		1	sORFs_org_Human	NMD sORF	Jurkat
285495	36	CTG ...	LQW ...	Ribo-seq	CTG		6	sORFs_org_Human	NMD sORF	BJ, Blood, hES, LCL, MDA-MB-231, RPE-1
285473	36	GTG ...	VKR ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
2314661	48	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	NMD sORF	HeLa, MDA-MB-231
907392	87	TGT ...	CMS ...	Ribo-seq	TGT		1	sORFs_org_Human	NMD sORF	Jurkat
1821085	51	TTG ...	LNM ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	HeLa
2314673	63	CTG ...	LPM ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	NMD sORF	MDA-MB-231
3653	108	GTG ...	VGS ...	Ribo-seq	GTG		18	sORFs_org_Human	NMD sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1821055	45	GTG ...	VDL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	NMD sORF	HeLa, MDA-MB-231
907412	72	GTT ...	VMN ...	Ribo-seq	GTT		1	sORFs_org_Human	NMD sORF	Jurkat
3651	132	CTG ...	LMA ...	Ribo-seq	CTG		13	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1821091	36	TTG ...	LLY ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	HeLa
1821083	39	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	HeLa
1821101	36	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HeLa
907409	216	GGA ...	GNS ...	Ribo-seq	GGA		1	sORFs_org_Human	NMD sORF	Jurkat
907398	69	CAG ...	QKQ ...	Ribo-seq	CAG		1	sORFs_org_Human	NMD sORF	Jurkat
1821103	30	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
285493	45	CTG ...	LKG ...	Ribo-seq	CTG		4	sORFs_org_Human	NMD sORF	HEK293, LCL, MDA-MB-231, RPE-1
3649	138	GTG ...	VSL ...	Ribo-seq	GTG		12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
285489	45	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	NMD sORF	HeLa, LCL
2544363	45	ATG ...	MWN ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HEK293
1316832	126	TTG ...	LLK ...	Ribo-seq	TTG		3	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa
907405	276	CCA ...	PES ...	Ribo-seq	CCA		1	sORFs_org_Human	NMD sORF	Jurkat
1821093	39	ATG ...	MGI ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
907387	144	CAC ...	HIK ...	Ribo-seq	CAC		1	sORFs_org_Human	NMD sORF	Jurkat
907396	75	TCC ...	SLL ...	Ribo-seq	TCC		1	sORFs_org_Human	NMD sORF	Jurkat
285501	57	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
1821075	63	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HeLa
2314671	78	TTG ...	LQK ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	NMD sORF	MDA-MB-231
102014	42	GTG ...	VHR ...	Ribo-seq	GTG		14	sORFs_org_Human	NMD sORF	Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1821095	60	ATG ...	MCI ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
907385	75	CGT ...	RCE ...	Ribo-seq	CGT		1	sORFs_org_Human	NMD sORF	Jurkat
907379	102	GAG ...	EIP ...	Ribo-seq	GAG		1	sORFs_org_Human	NMD sORF	Jurkat
285475	54	GTG ...	VRS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
1821081	57	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HeLa
907407	39	GCA ...	AAF ...	Ribo-seq	GCA	strong	1	sORFs_org_Human	NMD sORF	Jurkat
1821057	72	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	NMD sORF	HeLa, MDA-MB-231
2314675	57	ATG ...	MQA ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	NMD sORF	MDA-MB-231
285503	45	TTG ...	LWE ...	Ribo-seq	TTG		3	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
3647	189	CTG ...	LLE ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
528374	123	CTG ...	LKK ...	Ribo-seq	CTG		6	sORFs_org_Human	NMD sORF	Blood, guo_2014, HEK293, HeLa, Jurkat, U2OS
3657	33	CTG ...	LIE ...	Ribo-seq	CTG		22	sORFs_org_Human	NMD sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
285479	69	ATG ...	MQT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
1821099	66	TTG ...	LIC ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	HeLa
285483	288	TTG ...	LGT ...	Ribo-seq	TTG		12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3655	75	CTG ...	LVM ...	Ribo-seq	CTG		21	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
528365	33	TTG ...	LQV ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
1821079	87	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HeLa
285485	267	CTG ...	LTQ ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907381	36	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1
1725225	57	GTG ...	VNI ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	NMD sORF	Blood, HeLa, MDA-MB-231
528370	60	GTG ...	VEV ...	Ribo-seq	GTG		10	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2314656	84	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	MDA-MB-231
102012	48	CTG ...	LAV ...	Ribo-seq	CTG		14	sORFs_org_Human	NMD sORF	Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
528368	72	GTG ...	VEV ...	Ribo-seq	GTG		7	sORFs_org_Human	NMD sORF	BJ, HeLa, hES, HFF, RPE-1, U2OS
1821077	93	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
2314658	69	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	MDA-MB-231
907400	36	TCT ...	SAT ...	Ribo-seq	TCT		1	sORFs_org_Human	NMD sORF	Jurkat
407520	126	GCT ...	ADG ...	Ribo-seq	GCT		2	sORFs_org_Human	NMD sORF	HCT116, Jurkat
285487	69	ATG ...	MVR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
528372	54	GTG ...	VKE ...	Ribo-seq	GTG		11	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1725220	60	GTG ...	VKR ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	NMD sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
285499	60	CTG ...	LMG ...	Ribo-seq	CTG		3	sORFs_org_Human	NMD sORF	HeLa, LCL, MDA-MB-231
285477	36	CTG ...	LWI ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	NMD sORF	Blood, HeLa, hES, LCL, MDA-MB-231, THP-1
1821073	114	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	HeLa
285481	33	GTG ...	VAK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	NMD sORF	guo_2014, HeLa, LCL, MDA-MB-231
1821097	33	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HeLa

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