Transcript 96514 | MetamORF

Transcript

ID CARD

MetamORF ID

96514

ENST00000417470

Name

COMMD3-BMI1-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

22316452-22329098

CDS Start-stop positions

-22326486

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:48326

Aliases

COMMD3-BMI1,
ENSG00000269897, HGNC:48326, NCBI:100532731,
OFF:COMMD3-BMI1

Chr 10

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
894085	36	AAC ...	NLH ...	Ribo-seq	AAC		1	sORFs_org_Human	NMD sORF	Jurkat
404059	33	CAG ...	QES ...	Ribo-seq	CAG		1	sORFs_org_Human	NMD sORF	HCT116
894076	93	CCG ...	PLL ...	Ribo-seq	CCG		1	sORFs_org_Human	NMD sORF	Jurkat
96513	210	TTG ...	LKH ...	Ribo-seq	TTG		4	sORFs_org_Human	NMD sORF	HEK293, HeLa
894083	57	ACA ...	TLS ...	Ribo-seq	ACA		1	sORFs_org_Human	NMD sORF	Jurkat
96520	48	CTG ...	LFC ...	Ribo-seq	CTG		5	sORFs_org_Human	NMD sORF	guo_2014, HEK293, HeLa
96516	192	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Human	NMD sORF	HEK293, HeLa
404061	87	TAT ...	YLE ...	Ribo-seq	TAT		2	sORFs_org_Human	NMD sORF	HCT116, Jurkat
894078	33	GGA ...	GRP ...	Ribo-seq	GGA		1	sORFs_org_Human	NMD sORF	Jurkat
894081	72	CCC ...	PSG ...	Ribo-seq	CCC		1	sORFs_org_Human	NMD sORF	Jurkat
96518	54	TTG ...	LSC ...	Ribo-seq	TTG		21	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
894087	30	GAA ...	EST ...	Ribo-seq	GAA		1	sORFs_org_Human	NMD sORF	Jurkat
404057	204	CAT ...	HID ...	Ribo-seq	CAT		2	sORFs_org_Human	NMD sORF	HCT116, Jurkat
894092	36	ACT ...	TVL ...	Ribo-seq	ACT		1	sORFs_org_Human	NMD sORF	Jurkat
894094	30	TTG ...	LHG ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	HeLa, Jurkat

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