Transcript 1868 | MetamORF

Transcript

ID CARD

MetamORF ID

1868

ENST00000398958

Name

RCC1-204

Strand

Biotype

protein_coding

Start-end positions

28505943-28539196

CDS Start-stop positions

28529867-28538007

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

HGNC:1913

Aliases

CHC1,
ENSG00000180198, HGNC:1913, NCBI:1104,
OFF:RCC1, RCC1

Chr 1

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1914	36	CTG ...	LRG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, THP-1
481199	36	CTG ...	LCP ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
481033	33	CTG ...	LRL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
87144	96	TTG ...	LWG ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1870	162	ATG ...	MRV ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1908	48	CTG ...	LMV ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1970	87	CTG ...	LRR ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
87110	123	CTG ...	LGK ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1889	30	GTG ...	VSS ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
1260245	267	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	Brain_tumor, HAP1, HEK293, HeLa, HFF, RPE-1
882907	57	TGT ...	CAC ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284565	45	ATG ...	MLC ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
481028	42	TTG ...	LCR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
87104	177	ATG ...	MMR ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1954	114	ATG ...	MGG ...	Ribo-seq	ATG	strong	12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
406685	36	AGA ...	RCH ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
882863	108	CAT ...	HPQ ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1901	33	CTG ...	LCR ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1260249	72	ATG ...	MLR ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	sORF Upstream	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1867	165	ATG ...	MMR ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1874	111	CTG ...	LGK ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1919	93	GTG ...	VCD ...	Ribo-seq	GTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
882933	135	CAC ...	HPH ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1921	36	TTG ...	LWC ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
1872	156	GTG ...	VPW ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1822316	51	TTG ...	LAQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3400207	1359	ATG ...	MSP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1822337	42	CTG ...	LRW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2074	48	GTG ...	VWS ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1912	42	GTG ...	VTS ...	Ribo-seq	GTG	moderate	16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1822335	63	TTG ...	LEG ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1910	45	ATG ...	MVT ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
900374	39	TAT ...	YLC ...	Ribo-seq	TAT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
284661	48	CTG ...	LLS ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
87136	129	TTG ...	LLH ...	Ribo-seq	TTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1, U2OS
900046	30	CAT ...	HPQ ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1965	90	GTG ...	VLR ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
181906	60	TTG ...	LET ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
900067	66	CAG ...	QHR ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
449097	72	ACA ...	TFN ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
181919	138	TTG ...	LLR ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
509287	81	TTG ...	LAL ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1923	105	TTG ...	LLH ...	Ribo-seq	TTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1, U2OS
1979	42	TTG ...	LWG ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2031	81	GTG ...	VFS ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2033	45	CTG ...	LGH ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1822333	66	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1963	99	TTG ...	LER ...	Ribo-seq	TTG	strong	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
480995	66	ATG ...	MLR ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, RPE-1
900285	90	TGT ...	CDA ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1260247	261	CTG ...	LRT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	Flp-In_T-REx-293, HAP1, HEK293, RPE-1
87108	168	GTG ...	VPW ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
87138	81	CTG ...	LGG ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
406814	102	GCC ...	ALE ...	Ribo-seq	GCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
900235	33	AGG ...	RRQ ...	Ribo-seq	AGG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
882937	126	CTC ...	LQA ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
87112	51	ATG ...	MMA ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
900330	57	TCG ...	SCF ...	Ribo-seq	TCG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
449093	99	CGA ...	RSA ...	Ribo-seq	CGA		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat
900226	108	GGA ...	GKW ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
181908	144	TTG ...	LDL ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
181926	111	TTG ...	LER ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1925	57	CTG ...	LGG ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1, U2OS
900056	78	ACA ...	TQV ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284663	45	CTG ...	LSP ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
87116	42	GTG ...	VSS ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
882878	120	GGA ...	GKW ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1885	39	ATG ...	MMA ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
87114	48	ATG ...	MAV ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1887	36	ATG ...	MAV ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
1260243	273	CTG ...	LRM ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HAP1, HEK293, RPE-1
87106	174	ATG ...	MRV ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
900245	39	TGG ...	WCL ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
509289	75	TTG ...	LTF ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
2059	30	ATG ...	MRT ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1
882892	63	GCT ...	AGC ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
882765	90	CTT ...	LRI ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1946	120	CTG ...	LSM ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS

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