Transcript 4936 | MetamORF

Transcript

ID CARD

MetamORF ID

4936

ENST00000398846

Name

SAC3D1-201

Strand

Biotype

protein_coding

Start-end positions

65040904-65044827

CDS Start-stop positions

65041293-65044727

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:30179

Aliases

ENSG00000168061,
HGNC:30179, HSU79266, NCBI:29901,
OFF:SAC3D1, SAC3D1, SHD1

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102650	186	CTG ...	LSA ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, hES, HFF, MDA-MB-231
2316840	246	CTG ...	LRA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316857	249	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
529608	78	ATG ...	MDS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, U2OS
909269	141	AGC ...	SCP ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316855	252	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3223353	66	ATG ...	MRF ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
529610	75	GTG ...	VQG ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, U2OS
2316851	273	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316842	225	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316863	177	ATG ...	MPA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1507103	48	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
909262	48	ATG ...	MGA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF Upstream	hES, Jurkat, RPE-1
2316861	186	ATG ...	MWA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
102646	219	GTG ...	VPS ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, hES, HFF, MDA-MB-231
2316846	153	GTG ...	VRW ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2316859	198	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
909267	180	GCC ...	AHR ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2316844	213	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1301636	174	CGT ...	RLP ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
1989438	84	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, MDA-MB-231
2316867	168	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
102648	189	ATG ...	MLS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231
2316853	270	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316849	171	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
4935	144	GTG ...	VPL ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
1989440	36	CTG ...	LWC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa

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