Transcript 1338 | MetamORF

Transcript

ID CARD

MetamORF ID

1338

ENST00000398761

Name

MICU1-202

Strand

Biotype

protein_coding

Start-end positions

72367327-72626191

CDS Start-stop positions

72368195-72566793

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:1530

Aliases

CALC,
CBARA1, EFHA3, ENSG00000107745,
FLJ12684, HGNC:1530, MICU1,
NCBI:10367, OFF:MICU1

Chr 10

ORFs

67 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
275220	57	GTG ...	VEV ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	sORF Upstream	HEK293, HFF, LCL, MM1S
275207	102	ATG ...	MFV ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231, RPE-1
280811	57	CTG ...	LQV ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
404546	225	TGG ...	WLS ...	Ribo-seq	TGG		5	sORFs_org_Human	Alternative sORF Upstream	HCT116, HEK293, HeLa, Jurkat, THP-1
1337	36	TTG ...	LHS ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
280793	105	TTG ...	LEN ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
280801	93	ATG ...	MFV ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2307688	42	ATG ...	MKN ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
275198	33	CTG ...	LDS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231
1128771	30	TTG ...	LKL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
632785	129	ATG ...	MKA ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
1499118	60	CTG ...	LRG ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
275209	111	ATG ...	MKG ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231, RPE-1
1721404	135	TTG ...	LNR ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1342	48	GTG ...	VMW ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
95375	48	TTG ...	LVA ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
896100	75	CAG ...	QIL ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
480518	39	ATG ...	MED ...	Ribo-seq	ATG	strong	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
280799	81	ATG ...	MRK ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896092	63	ACT ...	TTF ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
630555	63	ATG ...	MRI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
1340	45	ATG ...	MWC ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
896094	108	GTA ...	VYF ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280807	132	GTG ...	VTS ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896104	234	CCA ...	PWR ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
275213	141	GTG ...	VTS ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
280797	69	CTG ...	LQI ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
95383	93	TTG ...	LNA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
280809	48	CTG ...	LVF ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
97419	30	GTG ...	VSL ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
280791	96	GTG ...	VGS ...	Ribo-seq	GTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896106	57	TGG ...	WVL ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280805	123	GTG ...	VIK ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
275195	57	ATG ...	MWA ...	Ribo-seq	ATG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
95379	78	CTG ...	LWM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
280813	219	GTG ...	VFG ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
275211	132	GTG ...	VIK ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896096	54	TGG ...	WKG ...	Ribo-seq	TGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
896090	81	CTA ...	LQW ...	Ribo-seq	CTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896086	84	GTG ...	VMW ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280819	243	TTG ...	LTE ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
630551	48	CTG ...	LAC ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, THP-1
280817	231	CTG ...	LLE ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
280815	228	CTG ...	LEL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
275200	69	TTG ...	LPL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
280795	60	TTG ...	LPL ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896110	291	GTT ...	VSS ...	Ribo-seq	GTT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
275205	90	ATG ...	MRK ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
896098	87	AGA ...	RSC ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
275203	78	CTG ...	LQI ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
523435	33	TTG ...	LPT ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, U2OS
630553	66	CTG ...	LAT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
280821	279	CTG ...	LFH ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1721412	135	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
1717983	36	GTG ...	VFS ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1721406	57	CTG ...	LFF ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
1092683	45	GTG ...	VAC ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1
95377	72	ATG ...	MGE ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
523446	60	CTG ...	LWV ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896088	30	TCA ...	SRS ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
523450	78	CTG ...	LLW ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896112	216	GAG ...	EVG ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
95381	84	ATG ...	MTL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
632787	132	CTG ...	LMK ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1
280803	102	ATG ...	MKG ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
280823	288	TTG ...	LSP ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
404544	99	ACA ...	TPL ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116

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