Transcript 1917 | MetamORF

Transcript

ID CARD

MetamORF ID

1917

ENST00000397614

Name

RNH1-204

Strand

Biotype

protein_coding

Start-end positions

494513-506821

CDS Start-stop positions

494691-502162

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:10074

Aliases

ENSG00000023191,
HGNC:10074, NCBI:6050, OFF:RNH1,
RAI, RNH, RNH1

Chr 11

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
526445	36	CTG ...	LAQ ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	sORF Upstream	HEK293, RPE-1, U2OS
1204327	192	GTG ...	VQG ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HeLa, MM1S
409521	96	ACA ...	TGW ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
293806	48	GTG ...	VRP ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HFF, LCL, MDA-MB-231, U2OS
633329	78	CTG ...	LPG ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231, RPE-1, THP-1
633337	81	TTG ...	LQP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
633344	105	GTG ...	VRG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Overlapping sORF Upstream	HEK293, RPE-1, THP-1
293802	45	CTG ...	LAL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
633331	99	CTG ...	LRC ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1, THP-1
633323	102	GTG ...	VWH ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, THP-1
3199873	60	GCA ...	ASL ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
282038	57	GTG ...	VPG ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
633335	117	CTG ...	LPA ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, THP-1
1310162	210	TTC ...	FPQ ...	Ribo-seq	TTC		1	sORFs_org_Human	Overlapping sORF Upstream	HEK293
282042	156	CTG ...	LLL ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
638147	207	CTG ...	LCP ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, RPE-1, THP-1
1204323	54	CTG ...	LRR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, hES, MDA-MB-231, RPE-1
3199871	45	GCT ...	AAG ...	Ribo-seq	GCT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
293808	63	GTG ...	VPD ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, HFF, LCL, MDA-MB-231
633316	69	GTG ...	VPC ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, THP-1
3201115	150	ACT ...	TAW ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
633333	60	CTG ...	LRA ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
293800	39	CTG ...	LCC ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
633318	81	CTG ...	LRG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, THP-1
903033	45	TCC ...	SWP ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
293797	171	GTG ...	VSW ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231
1319722	174	CTG ...	LAE ...	Ribo-seq	CTG		5	sORFs_org_Human	Overlapping sORF Upstream	HEK293, MDA-MB-231, RPE-1
633325	108	CTG ...	LGV ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, THP-1
638143	225	GTG ...	VTA ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
282044	174	CTG ...	LQL ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1315722	72	CTG ...	LPP ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Overlapping sORF Upstream	HEK293, MDA-MB-231, RPE-1
1310164	114	ATC ...	ILD ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative sORF Upstream	HEK293
633310	48	CTG ...	LQQ ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, Monocyte, RPE-1, THP-1
8145	138	ATG ...	MWA ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, THP-1
293810	69	ATG ...	MRV ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, HFF, LCL, MDA-MB-231
282051	123	CTG ...	LHF ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
282053	159	GTG ...	VAS ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
633327	66	GTG ...	VRH ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1, THP-1
633320	54	CTG ...	LPR ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
1916	105	CTG ...	LHW ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
282048	63	ATG ...	MSA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, LCL, MDA-MB-231, RPE-1, THP-1
1596156	30	CTG ...	LAS ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, loayza_puch_2016, MDA-MB-231
1596158	36	ATG ...	MRL ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, loayza_puch_2016, MDA-MB-231
282046	63	GTG ...	VAS ...	Ribo-seq	GTG	strong	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
282040	153	CTG ...	LLP ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
293804	84	ATG ...	MRA ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
3201117	180	ACA ...	TAC ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1319724	219	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Human	Overlapping sORF Upstream	HEK293
8147	141	GTG ...	VMW ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
293814	204	ATG ...	MRA ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
903031	183	GGT ...	GEV ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282055	213	CTG ...	LWP ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HeLa, LCL, MM1S, RPE-1, THP-1
1511977	30	CTG ...	LAA ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231

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