Transcript 2062 | MetamORF

Transcript

ID CARD

MetamORF ID

2062

ENST00000397421

Name

CD151-203

Strand

Biotype

protein_coding

Start-end positions

832952-838834

CDS Start-stop positions

836070-838192

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:1630

Aliases

CD151,
ENSG00000177697, HGNC:1630, NCBI:977,
OFF:CD151, PETA-3, RAPH,
SFA-1, TSPAN24

Chr 11

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409802	177	AGG ...	RTG ...	Ribo-seq	AGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293
903238	51	CCG ...	PFA ...	Ribo-seq	CCG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1296770	153	CTG ...	LHH ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
2072	39	CTG ...	LWQ ...	Ribo-seq	CTG	weak	28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9045	162	GTG ...	VSG ...	Ribo-seq	GTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2070	42	CTG ...	LLW ...	Ribo-seq	CTG	weak	28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616970	63	ACA ...	TST ...	Ribo-seq	ACA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
9043	195	GTG ...	VAA ...	Ribo-seq	GTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903240	63	CCT ...	PQA ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
9057	42	CTG ...	LWG ...	Ribo-seq	CTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282167	33	CTG ...	LWG ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2068	36	CTG ...	LVS ...	Ribo-seq	CTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
9037	135	CTG ...	LGS ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
917074	165	ACA ...	TVS ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903248	63	CAC ...	HGA ...	Ribo-seq	CAC	strong	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
9041	228	CTG ...	LWT ...	Ribo-seq	CTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1503650	69	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	BJ, RPE-1
917072	225	TGG ...	WTS ...	Ribo-seq	TGG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
9051	87	GTG ...	VGS ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9047	135	GTG ...	VAV ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2066	84	GTG ...	VTT ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1818718	54	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3199891	168	CCG ...	PLT ...	Ribo-seq	CCG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
9035	189	GTG ...	VAP ...	Ribo-seq	GTG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2064	123	CTG ...	LSW ...	Ribo-seq	CTG	weak	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616966	87	TGC ...	CAC ...	Ribo-seq	TGC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
9039	36	CTG ...	LVS ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1818710	81	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
1818706	117	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
9049	129	GTG ...	VWS ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
903242	66	TCC ...	SSS ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
917068	66	TCC ...	SSS ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903246	48	TGG ...	WRS ...	Ribo-seq	TGG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1818716	57	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2616082	54	GGC ...	GWP ...	Ribo-seq	GGC	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, THP-1
9033	216	GTG ...	VSS ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9053	72	ATG ...	MPP ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
282165	39	TTG ...	LGL ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616084	42	TGT ...	CHG ...	Ribo-seq	TGT	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, THP-1
1296768	126	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa
1818708	114	CTG ...	LPV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
917070	48	TGG ...	WRS ...	Ribo-seq	TGG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1296766	129	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa
2616964	132	GGG ...	GSW ...	Ribo-seq	GGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
282156	84	GTG ...	VSS ...	Ribo-seq	GTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282158	57	GTG ...	VAP ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9055	48	TTG ...	LGL ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1818712	33	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
2616088	48	GAA ...	EPE ...	Ribo-seq	GAA	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, THP-1
1818720	36	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
917066	183	CCG ...	PFA ...	Ribo-seq	CCG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
526565	174	GTG ...	VDP ...	Ribo-seq	GTG		10	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293T, HeLa, hES, HFF, RPE-1, U2OS
903250	33	CAG ...	QQQ ...	Ribo-seq	CAG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
2061	132	CTG ...	LAW ...	Ribo-seq	CTG	moderate	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1818714	63	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa

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