Transcript 1161 | MetamORF

Transcript

ID CARD

MetamORF ID

1161

ENST00000395377

Name

TFAM-203

Strand

Biotype

protein_coding

Start-end positions

58385604-58394539

CDS Start-stop positions

-58394534

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:11741

Aliases

ENSG00000108064,
HGNC:11741, NCBI:7019, OFF:TFAM,
TCF6, TCF6L2, TFAM

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1160	123	GTG ...	VHR ...	Ribo-seq	GTG		25	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
901298	78	TGC ...	CAP ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	Jurkat
1165	90	GTG ...	VEV ...	Ribo-seq	GTG		12	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1
895177	141	CTT ...	LTF ...	Ribo-seq	CTT		1	sORFs_org_Human	sORF	Jurkat
1163	114	CTG ...	LWK ...	Ribo-seq	CTG		24	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
901294	93	GCT ...	AVE ...	Ribo-seq	GCT		1	sORFs_org_Human	sORF	Jurkat
1717389	45	TTG ...	LEN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231
404333	72	ACC ...	TEV ...	Ribo-seq	ACC	moderate	2	sORFs_org_Human	sORF	HCT116, Jurkat
280575	93	TTG ...	LPS ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	Blood, HEK293, LCL, MDA-MB-231
94960	42	TTG ...	LSK ...	Ribo-seq	TTG	moderate	20	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97004	60	TTG ...	LCI ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1
901290	105	AGC ...	SCA ...	Ribo-seq	AGC		1	sORFs_org_Human	sORF	Jurkat
97012	42	CTG ...	LKD ...	Ribo-seq	CTG		18	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
522963	42	ATG ...	MLI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	U2OS
901296	87	GAA ...	EVD ...	Ribo-seq	GAA		1	sORFs_org_Human	sORF	Jurkat
97007	33	CTG ...	LSW ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1, U2OS
406036	108	AAG ...	KST ...	Ribo-seq	AAG		1	sORFs_org_Human	sORF	HCT116
94958	66	GTG ...	VVF ...	Ribo-seq	GTG	strong	22	sORFs_org_Human	sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97010	45	TTG ...	LPS ...	Ribo-seq	TTG		16	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS

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