Transcript 2219185

Transcript

ID CARD

MetamORF ID

2219185

ENST00000393046

Name

PIAS3-204

Strand

Biotype

protein_coding

Start-end positions

145854746-145859836

CDS Start-stop positions

-145857003

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:16861

Aliases

ENSG00000131788,
FLJ14651, HGNC:16861, NCBI:10401,
OFF:PIAS3, PIAS3, ZMIZ5

Chr 1

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2219199	174	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
2219189	147	TTG ...	LYP ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2400098	39	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2219187	114	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2400100	84	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	MDA-MB-231
2219184	93	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2219196	165	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	MDA-MB-231
2400146	81	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231

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