Transcript 215941

Transcript

ID CARD

MetamORF ID

215941

ENST00000393045

Name

PIAS3-203

Strand

Biotype

protein_coding

Start-end positions

145848522-145859080

CDS Start-stop positions

145849446-145858990

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:16861

Aliases

ENSG00000131788,
FLJ14651, HGNC:16861, NCBI:10401,
OFF:PIAS3, PIAS3, ZMIZ5

Chr 1

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2400062	69	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2400048	51	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231
2988988	54	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
2219092	96	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219085	48	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219089	78	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2399885	36	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219157	63	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1902691	75	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2219145	120	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219120	84	ATG ...	MGW ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
215940	60	TTG ...	LWS ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2219109	87	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219151	48	GTG ...	VRW ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2400028	45	GTG ...	VMR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219174	198	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2399893	144	TTG ...	LAT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219114	75	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2399895	150	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219143	102	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2400024	36	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219129	108	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2399898	159	ATG ...	MNR ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219171	141	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219141	87	TTG ...	LMV ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2400056	57	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
345273	36	TTG ...	LWS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2399890	42	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2400060	66	TTG ...	LSC ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231
2219133	84	ATG ...	MVY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219155	60	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2219153	54	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2219182	243	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219149	153	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2400026	42	ATG ...	MRS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
1902680	153	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
1548373	33	TTG ...	LPP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231
2399935	96	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2219147	126	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231

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