Transcript 2438 | MetamORF

Transcript

ID CARD

MetamORF ID

2438

ENST00000389906

Name

APBB1-203

Strand

Biotype

protein_coding

Start-end positions

6395124-6419111

CDS Start-stop positions

6395534-6411347

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

HGNC:581

Aliases

APBB1,
ENSG00000166313, Fe65, HGNC:581,
NCBI:322, OFF:APBB1, RIR

Chr 11

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
936268	30	ATG ...	MPT ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Brain, HEK293
2328240	192	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2681734	33	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	RPE-1
8639	81	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2328227	135	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2310769	36	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
941360	69	ATG ...	MSW ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, MDA-MB-231
936262	150	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
8637	75	ATG ...	MEK ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2328216	138	ATG ...	MDS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
8635	63	TTG ...	LRM ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2310779	39	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2310775	60	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936254	87	GTG ...	VMR ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
2543257	57	GTG ...	VSG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2328225	123	GTG ...	VWQ ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
8633	57	ATG ...	MEN ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2328223	90	GTG ...	VRH ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1315957	33	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Overlapping sORF Upstream	HEK293, RPE-1
1309875	39	CAT ...	HVC ...	Ribo-seq	CAT	strong	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
936258	111	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
2310773	39	ATG ...	MNP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2310771	30	GTG ...	VMR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
936264	186	GTG ...	VWR ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
2310781	42	GTG ...	VVG ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2055505	69	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2437	33	CTG ...	LDR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, RPE-1
936244	42	TTG ...	LHP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
2328221	81	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2548763	111	TTG ...	LWM ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
936246	102	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
1208731	81	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, MDA-MB-231
2328238	168	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2310777	33	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936248	126	GTG ...	VFR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
2310783	81	CTG ...	LWD ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936256	96	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
936266	201	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
941362	216	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
3118362	30	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
481733	33	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
2328219	54	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936260	126	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
2310785	123	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936241	102	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
1504178	42	GTG ...	VME ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	sORF Upstream	BJ, MDA-MB-231, RPE-1
1309877	39	ATG ...	MEK ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
2548761	105	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2328236	153	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
936252	84	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain

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