Transcript 741 | MetamORF

Transcript

ID CARD

MetamORF ID

741

ENST00000381344

Name

IDI1-201

Strand

Biotype

protein_coding

Start-end positions

1039908-1049170

CDS Start-stop positions

1041187-1049003

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:5387

Aliases

ENSG00000067064,
HGNC:5387, IDI1, NCBI:3422,
OFF:IDI1

Chr 10

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2294532	36	GTG ...	VFI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	MDA-MB-231
1814915	90	TTG ...	LPD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
3301339	855	ATG ...	MWR ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
94434	45	ATG ...	MVS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
740	57	ATG ...	MLR ...	Ribo-seq	ATG		26	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
2950338	45	ATG ...	MCK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, hES, HFF
2294528	42	GTG ...	VTP ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	MDA-MB-231
1814917	93	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1814919	39	TTG ...	LLK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1715642	72	GTG ...	VVY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Downstream sORF	Blood, MDA-MB-231
933087	30	TTG ...	LIL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative Downstream sORF	Blood, Brain, HEK293, MDA-MB-231
1814913	75	CTG ...	LSY ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2294534	48	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	MDA-MB-231
94426	42	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
743	108	GTG ...	VSS ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1
900500	87	AAA ...	KIS ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1814911	60	GTG ...	VYI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1814923	63	TTG ...	LIV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream sORF	HeLa, MDA-MB-231
933091	57	GTG ...	VWF ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative Downstream sORF	Blood, Brain, HeLa, hES, MDA-MB-231
933089	33	ATG ...	MLI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative Downstream sORF	Blood, Brain, HEK293, MDA-MB-231
272541	33	TTG ...	LCG ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative Downstream sORF	HeLa, LCL, MDA-MB-231
1814932	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
900498	54	CTA ...	LRL ...	Ribo-seq	CTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2294530	72	TTG ...	LQD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	MDA-MB-231
1814925	78	TTG ...	LYH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream sORF	HeLa, MDA-MB-231
1814909	33	TTG ...	LIN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
272556	51	ATG ...	MKM ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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