Transcript 300 | MetamORF

Transcript

ID CARD

MetamORF ID

300

ENST00000378726

Name

SSU72-204

Strand

Biotype

retained_intron

Start-end positions

1541674-1546487

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

HGNC:25016

Aliases

ENSG00000160075,
HGNC:25016, HSPC182, NCBI:29101,
OFF:SSU72, SSU72

Chr 1

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
299	60	CTG ...	LQE ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
536	132	GTG ...	VVN ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, HFF
410193	39	AGT ...	SGR ...	Ribo-seq	AGT	strong	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
102825	81	CTG ...	LPA ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	Intronic sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
543	138	GTG ...	VHV ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, HFF
914474	63	GGT ...	GQC ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
102858	129	CTG ...	LCH ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, RPE-1
1826553	96	GTG ...	VHF ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
410561	69	GAG ...	ELC ...	Ribo-seq	GAG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
913927	294	ACA ...	TRK ...	Ribo-seq	ACA	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
410423	81	GAG ...	ENE ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
1826565	123	TTG ...	LCA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
914159	39	CCA ...	PRG ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1826512	66	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
521	75	ATG ...	MWT ...	Ribo-seq	ATG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
913690	33	CGC ...	RTF ...	Ribo-seq	CGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
410338	69	GAC ...	DEL ...	Ribo-seq	GAC	strong	1	sORFs_org_Human	Intronic sORF	HCT116
302	63	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1826529	99	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
914576	84	ACG ...	TWS ...	Ribo-seq	ACG		1	sORFs_org_Human	Intronic sORF	Jurkat
410620	102	GAG ...	EEA ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	HCT116
1826585	159	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
914391	51	CAT ...	HPG ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
914302	45	GGA ...	GQP ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
507	123	GTG ...	VDI ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	HEK293, hES, HFF
1826580	147	TTG ...	LIT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1826545	78	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
545	90	CTG ...	LCT ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
410288	57	CAG ...	QEF ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
572	171	CTG ...	LNS ...	Ribo-seq	CTG		19	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, RPE-1, THP-1

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