Transcript 968 | MetamORF

Transcript

ID CARD

MetamORF ID

968

ENST00000378694

Name

MCM10-201

Strand

Biotype

protein_coding

Start-end positions

13164128-13211104

CDS Start-stop positions

13164203-13209160

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:18043

Aliases

CNA43,
DNA43, ENSG00000065328, HGNC:18043,
MCM10, NCBI:55388, OFF:MCM10,
PRO2249

Chr 10

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2536349	54	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
632401	207	CTG ...	LSV ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
273079	78	CTG ...	LMM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, U2OS
1720641	57	ATG ...	MQL ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2536358	147	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
94632	51	CTG ...	LLP ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Downstream sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
94600	69	TTG ...	LMS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
273069	129	TTG ...	LMS ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
273075	114	ATG ...	MPT ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
273095	51	TTG ...	LEK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
970	54	CTG ...	LWK ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
900822	36	GTA ...	VCS ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1815209	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
972	90	GTG ...	VET ...	Ribo-seq	GTG		8	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
280005	84	CTG ...	LGK ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
273071	126	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1720630	183	GTG ...	VRI ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
273097	45	GTG ...	VFI ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
94602	66	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2536347	72	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
900816	156	GGA ...	GSA ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1716111	69	GTG ...	VCP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
893509	30	AAA ...	KNL ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2295197	45	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
273073	117	TTG ...	LMP ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231, U2OS
2295208	102	ATG ...	MKK ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
273081	75	ATG ...	MME ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, U2OS
1720632	159	CTG ...	LED ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
900818	87	AGA ...	RTA ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280003	105	TTG ...	LWG ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
273077	99	GTG ...	VNL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
893493	120	TCT ...	STL ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
273067	147	ATG ...	MAS ...	Ribo-seq	ATG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
893531	75	GGT ...	GPK ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Downstream sORF	Jurkat
94598	78	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
273085	54	GTG ...	VHP ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
1720639	66	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
893501	48	AAG ...	KCT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
273089	63	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
900824	189	GTG ...	VWS ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat, MDA-MB-231
273099	69	GTG ...	VKL ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
94604	60	CTG ...	LRY ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
893497	39	CAA ...	QSV ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1716114	36	CTG ...	LWL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
273093	54	TTG ...	LGD ...	Ribo-seq	TTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
94630	36	GTG ...	VAS ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
893503	72	CAG ...	QEV ...	Ribo-seq	CAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
280007	198	CTG ...	LCG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1720634	135	TTG ...	LPA ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
900820	54	AGG ...	RGF ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
967	60	ATG ...	MSL ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
273101	60	TTG ...	LTW ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231
2536351	48	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
893495	111	CTC ...	LIW ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
893511	189	GGA ...	GSA ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1720637	93	ATG ...	MAF ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
273083	72	ATG ...	MEK ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, U2OS
273091	39	GTG ...	VWK ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
632403	78	GTG ...	VPR ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
480221	42	CTG ...	LSL ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, THP-1
273087	84	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
2295221	45	GTG ...	VQQ ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
893505	138	GAA ...	EQE ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
273109	60	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1401905	114	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293

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