Transcript 96581 | MetamORF

Transcript

ID CARD

MetamORF ID

96581

ENST00000375972

Name

YME1L1-202

Strand

Biotype

protein_coding

Start-end positions

27111734-27154356

CDS Start-stop positions

27111882-27154210

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:12843

Aliases

ENSG00000136758,
HGNC:12843, NCBI:10730, OFF:YME1L1,
YME1L, YME1L1

Chr 10

ORFs

85 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
894283	111	GTA ...	VST ...	Ribo-seq	GTA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1093525	219	ATG ...	MQC ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
3219549	60	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1716660	141	GTG ...	VWK ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HFF, MDA-MB-231
273649	174	TTG ...	LDP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, U2OS
1716652	87	ATG ...	MPL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231
1716674	57	CTG ...	LLV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
96583	51	CTG ...	LFL ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, THP-1
894269	39	AGC ...	SKT ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
522484	159	CTG ...	LER ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, U2OS
1092224	36	GTG ...	VLP ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa
3219556	252	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2306615	132	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
525359	177	CTG ...	LGG ...	Ribo-seq	CTG		11	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
2306617	135	CTG ...	LMF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1092237	45	CTG ...	LVV ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1716662	153	CTG ...	LKE ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, HFF, MDA-MB-231
629870	39	CTG ...	LHN ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES, MM1S, RPE-1, THP-1
2903123	165	CTG ...	LSY ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2306601	132	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
2306611	300	GTG ...	VWK ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
3219558	258	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
273656	54	CTG ...	LRA ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1716658	132	TTG ...	LIT ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
2092737	93	CTG ...	LDF ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, RPE-1
273658	63	GTG ...	VRS ...	Ribo-seq	GTG		24	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3199218	42	CTC ...	LMQ ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
273651	30	ATG ...	MSP ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2306621	189	TTG ...	LDP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1093518	99	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1
629874	39	TTG ...	LAY ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, MDA-MB-231, Monocyte, THP-1
280250	147	GTG ...	VIS ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HeLa, LCL
481234	42	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa
3108266	96	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
1716670	51	GTG ...	VGR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1132890	117	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
404086	171	CCG ...	PFL ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
1716668	39	TTG ...	LNL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1129692	30	TTG ...	LIN ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293
1716656	99	ATG ...	MNL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1720866	81	GTG ...	VWE ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1093531	72	ATG ...	MSP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1093522	150	CTG ...	LRM ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
273643	39	CTG ...	LLA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
1129701	45	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
404084	45	CGC ...	RRR ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
1093529	246	ATG ...	MPL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
2903125	180	TTG ...	LHF ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
280245	171	TTG ...	LSR ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
894279	54	TCT ...	SAA ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
894289	48	CAG ...	QWS ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1093520	111	TTG ...	LHK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2306603	144	ATG ...	MTD ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
1716672	54	TTG ...	LVG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1093527	237	TTG ...	LHI ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
629876	93	CTG ...	LDF ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
480295	39	ATG ...	MQR ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, hES, MDA-MB-231, RPE-1
894285	72	CTT ...	LAC ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1716680	51	CTG ...	LKL ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
629868	36	ATG ...	MHL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231, THP-1
1129699	39	CTG ...	LHN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
273641	36	TTG ...	LAF ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
894277	42	CGG ...	RHL ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404082	36	TGT ...	CFP ...	Ribo-seq	TGT		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, HEK293, Jurkat
273660	156	GTG ...	VRG ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96580	39	GTG ...	VEC ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405952	183	CCG ...	PFL ...	Ribo-seq	CCG		1	sORFs_org_Human	Overlapping sORF Upstream	HCT116
1716676	33	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2306613	87	TTG ...	LWV ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1497898	30	CTG ...	LLM ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1
1092235	36	TTG ...	LTC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, MDA-MB-231, RPE-1
1309810	48	TGT ...	CFP ...	Ribo-seq	TGT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2306609	291	TTG ...	LIT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
894294	120	AGG ...	RAQ ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2306619	174	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
96585	78	ATG ...	MPS ...	Ribo-seq	ATG	weak	21	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
894292	57	TCG ...	SLR ...	Ribo-seq	TCG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
273662	165	CTG ...	LGG ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
894287	123	TTC ...	FLL ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
525357	168	GTG ...	VRG ...	Ribo-seq	GTG		12	sORFs_org_Human	Overlapping sORF Upstream	BJ, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
629872	45	ATG ...	MSL ...	Ribo-seq	ATG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, RPE-1, THP-1
1716654	93	CTG ...	LVM ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa
1092231	78	TTG ...	LHI ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231
1092229	60	ATG ...	MQC ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1716687	30	CTG ...	LSM ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231

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