Transcript 87482 | MetamORF

Transcript

ID CARD

MetamORF ID

87482

ENST00000373703

Name

PEF1-201

Strand

Biotype

protein_coding

Start-end positions

31629862-31644887

CDS Start-stop positions

31630613-31644864

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:30009

Aliases

ENSG00000162517,
HGNC:30009, NCBI:553115, OFF:PEF1,
PEF1, PEF1A

Chr 1

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
87516	285	CTG ...	LVV ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87500	231	GTG ...	VEG ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87488	141	ATG ...	MVS ...	Ribo-seq	ATG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
87518	297	GTG ...	VGY ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87498	219	ATG ...	MDT ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87514	282	GTG ...	VVV ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
3409558	855	ATG ...	MAS ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
87481	93	ATG ...	MDR ...	Ribo-seq	ATG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
87510	273	ATG ...	MGV ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87484	102	CTG ...	LGF ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
479337	138	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF
479339	165	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
87496	204	CTG ...	LGC ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
883720	210	CCA ...	PIL ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
87504	246	ATG ...	MDH ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
883718	105	AGC ...	SLG ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
87502	234	CTG ...	LVE ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87508	264	CTG ...	LPL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
87506	258	CTG ...	LEG ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
87490	162	GTG ...	VQL ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
87494	189	CTG ...	LEL ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
87486	114	GTG ...	VPS ...	Ribo-seq	GTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
87512	279	GTG ...	VVM ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1
87492	168	ATG ...	MAV ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS

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