Transcript 87758 | MetamORF

Transcript

ID CARD

MetamORF ID

87758

ENST00000373586

Name

EIF3I-202

Strand

Biotype

protein_coding

Start-end positions

32222370-32231604

CDS Start-stop positions

32222442-32231196

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:3272

Aliases

eIF3-beta,
eIF3-p36, eIF3i, EIF3I,
EIF3S2, ENSG00000084623, HGNC:3272,
NCBI:8668, OFF:EIF3I, TRIP-1

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
87813	108	TTG ...	LNI ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
247660	93	CTG ...	LFG ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3400345	978	ATG ...	MKP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
87757	96	ATG ...	MSG ...	Ribo-seq	ATG		33	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
449634	99	CCA ...	PVL ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1824984	60	GTG ...	VDL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
3196709	96	AGA ...	RLS ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
449632	126	AGA ...	RSL ...	Ribo-seq	AGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
479390	36	CTG ...	LGH ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
247666	54	ATG ...	MRV ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
4987	54	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
905621	51	AGA ...	RWL ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
247664	60	CTG ...	LAM ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
247668	48	GTG ...	VES ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
87793	114	ATG ...	MTL ...	Ribo-seq	ATG		23	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
247656	96	GTG ...	VLF ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1483928	63	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
87809	123	TTG ...	LTP ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
87815	75	CTG ...	LST ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1

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