Metam
ORF

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Transcript

ID CARD

MetamORF ID

1251

ID

ENST00000373232

Name

PPA1-202

Strand

-

Biotype

protein_coding

Start-end positions

70202830-70233427

CDS Start-stop positions

70203155-70233327

CDS Relative positions

-

Sequences

Transcript sequence

AGT ...

Gene

ID

HGNC:9226

Aliases

ENSG00000180817,
HGNC:9226, IOPPP, NCBI:5464,
OFF:PPA1, PP, PP1,
PPA1, Ppase, SID6-8061


Chr 10

ORFs

15 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

99926 87

ATG ...

MSL ...

Ribo-seq
ATG 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HEK293T
1257 57

ATG ...

MWM ...

Ribo-seq
ATG 33 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Brain_tumor, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, Monocyte, RPE-1,
THP-1, U2OS
1268 75

ATG ...

MRK ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1261 96

TTG ...

LTK ...

Ribo-seq
TTG 18 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, LCL,
MM1S, Monocyte, RPE-1,
U2OS
1253 45

CTG ...

LMQ ...

Ribo-seq
CTG 28 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1259 66

TTG ...

LPL ...

Ribo-seq
TTG 31 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, Monocyte,
RPE-1, THP-1, U2OS
481306 81

TTG ...

LRL ...

Ribo-seq
TTG 3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HEK293T
1250 42

ATG ...

MQP ...

Ribo-seq
ATG 27 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
481310 105

CTG ...

LME ...

Ribo-seq
CTG 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HEK293T
97313 51

GTG ...

VVP ...

Ribo-seq
GTG moderate 3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, HeLa, LCL
1255 51

ATG ...

MIL ...

Ribo-seq
ATG 32 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
901456 30

ATA ...

IMI ...

Ribo-seq
ATA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
99928 102

ATG ...

MEN ...

Ribo-seq
ATG 6 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HEK293T,
HeLa, HFF
1818280 171

GTG ...

VNL ...

Ribo-seq
GTG 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HeLa
1818278 165

CTG ...

LPA ...

Ribo-seq
CTG 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HeLa

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS