Transcript 1371 | MetamORF

Transcript

ID CARD

MetamORF ID

1371

ENST00000372755

Name

VCL-202

Strand

Biotype

protein_coding

Start-end positions

73998114-74121363

CDS Start-stop positions

73998208-74118169

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:12665

Aliases

ENSG00000035403,
HGNC:12665, NCBI:7414, OFF:VCL,
VCL

Chr 10

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
280960	144	ATG ...	MRL ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, U2OS
280952	105	TTG ...	LQR ...	Ribo-seq	TTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
280958	147	CTG ...	LMR ...	Ribo-seq	CTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1499502	30	TTG ...	LQQ ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
523790	108	TTG ...	LLL ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
523799	63	GTG ...	VVP ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
275644	36	ATG ...	MKS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
901633	93	CCA ...	PCW ...	Ribo-seq	CCA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
280950	33	ATG ...	MPG ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
275640	84	CTG ...	LKV ...	Ribo-seq	CTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
280968	69	GTG ...	VMR ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1982449	114	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa, hES, HFF
481369	87	CTG ...	LPD ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
525826	117	GTG ...	VPE ...	Ribo-seq	GTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1373	39	ATG ...	MKM ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
275638	114	ATG ...	MSL ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
280970	66	ATG ...	MRS ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
901628	264	CAG ...	QIY ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280972	57	CTG ...	LSR ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
525830	207	ATG ...	MFS ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
480592	39	ATG ...	MTS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
481366	138	CTG ...	LIK ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
525840	72	TTG ...	LPS ...	Ribo-seq	TTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
481373	69	ATG ...	MKL ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
523797	30	ATG ...	MKL ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
275642	78	GTG ...	VRS ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
523803	36	GTG ...	VPR ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1816519	87	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
3199439	45	CCA ...	PDS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
480588	48	CTG ...	LPD ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
280944	99	TTG ...	LQR ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
481371	72	ATG ...	MMK ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
3199441	138	AGG ...	RRL ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293
1370	63	GTG ...	VCY ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1499509	120	CTG ...	LKL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, HeLa, hES, HFF
280964	45	CTG ...	LTS ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
480590	33	ATG ...	MMK ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1982451	90	ATG ...	MLD ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
280942	99	CTG ...	LTS ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
280962	84	CTG ...	LWP ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1499507	132	CTG ...	LCG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, HeLa, hES, HFF
275602	30	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293T
525824	126	CTG ...	LTS ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
523801	33	GTG ...	VCQ ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS

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