Transcript 1407 | MetamORF

Transcript

ID CARD

MetamORF ID

1407

ENST00000372524

Name

ZNF503-201

Strand

Biotype

protein_coding

Start-end positions

75397830-75401906

CDS Start-stop positions

75398749-75401419

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:23589

Aliases

ENSG00000165655,
FLJ45745, HGNC:23589, MGC2555,
NCBI:84858, Nlz2, OFF:ZNF503,
ZNF503

Chr 10

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
95656	168	ATG ...	MPR ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
480609	207	TTG ...	LEG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HEK293T
1816548	36	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
95648	294	GTG ...	VAG ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95626	39	GTG ...	VPG ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
480600	30	ATG ...	MIR ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF
95650	300	GTG ...	VAV ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95616	75	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1402895	153	GTG ...	VQT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa
95638	96	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95632	216	CTG ...	LRR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95658	69	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T
95620	222	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1402891	123	CTG ...	LEI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
95624	150	CTG ...	LLA ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
480605	66	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HEK293T
480603	48	GTG ...	VGH ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HEK293T
95630	72	CTG ...	LGW ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
480607	156	GTG ...	VSF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HEK293T
95644	201	CTG ...	LPA ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95646	273	GTG ...	VFR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1406	237	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
1402889	66	TTG ...	LCT ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
95652	78	TTG ...	LPP ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95622	147	CTG ...	LAP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
95640	144	GTG ...	VPR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3303148	1941	ATG ...	MST ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
95618	162	CTG ...	LGR ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
95628	123	TTG ...	LTP ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95642	150	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
95636	177	ATG ...	MGA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF
95654	198	ATG ...	MFA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1982516	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1402893	144	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa

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