Transcript 95831 | MetamORF

Transcript

ID CARD

MetamORF ID

95831

ENST00000371581

Name

IDE-202

Strand

Biotype

protein_coding

Start-end positions

92451684-92497761

CDS Start-stop positions

92454444-92483328

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:5381

Aliases

ENSG00000119912,
HGNC:5381, IDE, NCBI:3416,
OFF:IDE

Chr 10

ORFs

75 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404795	123	GCA ...	APQ ...	Ribo-seq	GCA		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
2308471	84	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1718773	33	TTG ...	LLE ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2542335	75	GTG ...	VLN ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
404801	36	CCT ...	PAL ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
281391	90	CTG ...	LIA ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF Upstream	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
281393	102	TTG ...	LKE ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, LCL, MDA-MB-231
901855	93	AGA ...	RSY ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2308487	42	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1718782	63	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
281375	174	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
897344	87	ACA ...	TNQ ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2308483	114	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
276564	72	CTG ...	LIA ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF Upstream	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
2300302	30	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
901853	84	GAC ...	DIR ...	Ribo-seq	GAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
276556	39	ATG ...	MNL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	sORF Upstream	Blood, HAP1, HEK293, hES, LCL, MDA-MB-231
2308479	105	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
404797	138	AAA ...	KQT ...	Ribo-seq	AAA		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1718780	45	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
2308493	150	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
3199837	177	ACT ...	TVA ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
406160	138	GCA ...	APQ ...	Ribo-seq	GCA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
95830	36	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
276560	51	ATG ...	MEP ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
276552	30	CTG ...	LKW ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1721772	60	TTG ...	LPG ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
897350	99	GGA ...	GKV ...	Ribo-seq	GGA	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
404805	45	GCT ...	AIP ...	Ribo-seq	GCT		2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
1721776	96	ATG ...	MLQ ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
404803	54	AAA ...	KEA ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
276566	84	TTG ...	LKE ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, LCL, MDA-MB-231
276544	39	TTG ...	LLQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, LCL, MDA-MB-231, U2OS
276558	66	ATG ...	MGN ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	sORF Upstream	Blood, HAP1, HEK293, LCL, MDA-MB-231
281381	225	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
3199486	57	CTA ...	LNT ...	Ribo-seq	CTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
281377	192	ATG ...	MKF ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
97910	126	CTG ...	LNG ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, hES, HFF, MDA-MB-231
404799	57	ACA ...	TIS ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
281389	69	ATG ...	MEP ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, LCL, MDA-MB-231
276546	60	CTG ...	LSD ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, U2OS
281379	210	TTG ...	LFI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
631091	45	CTG ...	LNS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231, THP-1
897348	57	ACA ...	THS ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897359	180	GAA ...	EMK ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
276548	159	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
897338	42	AGA ...	RHL ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2308481	108	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1718775	36	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
276554	57	ATG ...	MIS ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
281385	291	TTG ...	LNM ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
406162	153	AAA ...	KQT ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
897342	78	AGA ...	RSY ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1718785	90	ATG ...	MWT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
97906	36	ATG ...	MKK ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
97908	39	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3199489	162	ACT ...	TVA ...	Ribo-seq	ACT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
480658	51	TTG ...	LSS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
897362	39	GTA ...	VWN ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
897355	102	AGA ...	RHA ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901862	195	GAA ...	EMK ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281383	285	ATG ...	MLI ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
276562	42	GTG ...	VVW ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	Alternative sORF Upstream	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1718771	30	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2538782	195	TTG ...	LFI ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1721774	66	ATG ...	MFL ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2308469	81	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
901860	165	AGA ...	RYT ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897357	150	AGA ...	RYT ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2308485	132	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
276550	129	CTG ...	LWH ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
2538780	177	ATG ...	MKF ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
897346	48	GGC ...	GIS ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901857	102	ACA ...	TNQ ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2300315	96	TTG ...	LLM ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231

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