Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

618

ID

ENST00000370355

Name

SCD-201

Strand

+

Biotype

protein_coding

Start-end positions

100347124-100364834

CDS Start-stop positions

100347505-100360933

CDS Relative positions

-

Sequences

Transcript sequence

GTG ...

Gene

ID

HGNC:10571

Aliases

ENSG00000099194,
FADS5, HGNC:10571, NCBI:6319,
OFF:SCD, SCD, SCDOS


Chr 10

ORFs

109 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

96144 129

GTG ...

VPT ...

Ribo-seq
GTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, loayza_puch_2016,
MM1S
98285 123

ATG ...

MIY ...

Ribo-seq
ATG moderate 5 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Brain_tumor, HEK293,
HeLa, hES, HFF
3199529 33

CAA ...

QRE ...

Ribo-seq
CAA weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
98290 78

GTG ...

VAF ...

Ribo-seq
GTG strong 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
1817005 69

TTG ...

LLS ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1313606 141

GTG ...

VSA ...

Ribo-seq
GTG weak 1 sORFs_org_Human
    sORF
    Upstream
HEK293
898179 51

GAT ...

DDV ...

Ribo-seq
GAT strong 3 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HeLa, Jurkat, THP-1
405020 141

CTC ...

LVT ...

Ribo-seq
CTC strong 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
900303 237

TTC ...

FET ...

Ribo-seq
TTC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
1817029 150

TTG ...

LSF ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
405012 54

ATA ...

ISW ...

Ribo-seq
ATA moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
900305 231

ACC ...

TAV ...

Ribo-seq
ACC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
405034 108

ACA ...

TVL ...

Ribo-seq
ACA 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
1313604 147

GTG ...

VSV ...

Ribo-seq
GTG 1 sORFs_org_Human
    sORF
    Upstream
HEK293
98294 45

GTG ...

VLH ...

Ribo-seq
GTG moderate 17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1
1313602 150

GTG ...

VVS ...

Ribo-seq
GTG 1 sORFs_org_Human
    sORF
    Upstream
HEK293
405022 93

CTC ...

LII ...

Ribo-seq
CTC moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
96160 51

TTG ...

LPL ...

Ribo-seq
TTG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, loayza_puch_2016,
MM1S, RPE-1, U2OS
405024 81

GAC ...

DVA ...

Ribo-seq
GAC moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
96130 63

ATG ...

MEE ...

Ribo-seq
ATG strong 33 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Brain_tumor, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1817019 153

CTG ...

LGF ...

Ribo-seq
CTG strong 1 sORFs_org_Human
    Downstream
    sORF
HeLa
96172 75

ATG ...

MTR ...

Ribo-seq
ATG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HEK293T, HeLa,
LCL, loayza_puch_2016, U2OS
1817035 75

ATG ...

MST ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
Johnstone2016
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
898162 63

TTC ...

FLP ...

Ribo-seq
TTC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
898158 117

TAT ...

YMT ...

Ribo-seq
TAT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1816991 93

CTG ...

LLC ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1816993 96

TTG ...

LVL ...

Ribo-seq
TTG strong 1 sORFs_org_Human
    Downstream
    sORF
HeLa
405026 75

GCT ...

AFS ...

Ribo-seq
GCT moderate 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, HEK293, Jurkat
96162 33

ATG ...

MLW ...

Ribo-seq
ATG moderate 29 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Brain_tumor, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
1438360 69

TTG ...

LAA ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
HeLa
2615872 207

TCG ...

SSV ...

Ribo-seq
TCG 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa, THP-1
898177 66

CAA ...

QTW ...

Ribo-seq
CAA weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1046659 48

CTG ...

LRD ...

Ribo-seq
CTG moderate 2 sORFs_org_Human
    Alternative
    Downstream
    sORF
guo_2014, HeLa
898190 168

TGG ...

WPP ...

Ribo-seq
TGG moderate 2 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, Jurkat
405028 30

AGA ...

REG ...

Ribo-seq
AGA moderate 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116, HeLa, Jurkat,
THP-1
2902810 33

TTG ...

LEL ...

Ribo-seq
TTG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa
898188 48

ATA ...

ISW ...

Ribo-seq
ATA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1817031 30

TTG ...

LLV ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
898172 39

GCA ...

ANT ...

Ribo-seq
GCA weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1817025 117

GTG ...

VSV ...

Ribo-seq
GTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817037 66

ATG ...

MNL ...

Ribo-seq
ATG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817023 126

CTG ...

LNT ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
898145 39

GAC ...

DLH ...

Ribo-seq
GAC moderate 1 sORFs_org_Human
    sORF
    Upstream
Jurkat
3300289 1080

ATG ...

MPA ...

Ribo-seq
ATG 1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
96142 138

GTG ...

VTT ...

Ribo-seq
GTG weak 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, loayza_puch_2016, MM1S,
RPE-1, U2OS
405006 36

ATT ...

IPG ...

Ribo-seq
ATT weak 4 sORFs_org_Human
    Alternative
    sORF
    Upstream
HCT116, HEK293, Jurkat
898147 141

GCG ...

AAQ ...

Ribo-seq
GCG 4 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
HEK293, HeLa, Jurkat,
THP-1
1816989 54

ATG ...

MIR ...

Ribo-seq
ATG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
524625 90

CTG ...

LSP ...

Ribo-seq
CTG weak 6 sORFs_org_Human
    sORF
    Upstream
BJ, HEK293, HeLa,
RPE-1, THP-1, U2OS
1817021 129

CTG ...

LLN ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
96154 99

TTG ...

LCP ...

Ribo-seq
TTG weak 28 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1817033 72

CTG ...

LSI ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1816999 87

ATG ...

MFG ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
Johnstone2016
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
96158 60

GTG ...

VCS ...

Ribo-seq
GTG moderate 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
1817001 45

ATG ...

MPI ...

Ribo-seq
ATG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
898142 102

TCT ...

SVS ...

Ribo-seq
TCT strong 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
HEK293, Jurkat
96148 99

CTG ...

LIL ...

Ribo-seq
CTG moderate 29 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, Jurkat,
LCL, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
96166 48

CTG ...

LAG ...

Ribo-seq
CTG moderate 32 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, Jurkat, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
524621 129

CTG ...

LLR ...

Ribo-seq
CTG moderate 5 sORFs_org_Human
    Alternative
    sORF
    Upstream
HEK293, HeLa, loayza_puch_2016,
RPE-1, U2OS
405010 48

CCG ...

PAT ...

Ribo-seq
CCG moderate 2 sORFs_org_Human
    sORF
    Upstream
HCT116, HEK293
96152 45

TTG ...

LCA ...

Ribo-seq
TTG weak 30 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
898182 81

GGG ...

GVK ...

Ribo-seq
GGG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
96150 63

TTG ...

LAA ...

Ribo-seq
TTG strong 30 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
934532 114

ATG ...

MTP ...

Ribo-seq
ATG weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain
898160 78

GTC ...

VSA ...

Ribo-seq
GTC 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
934534 72

TTG ...

LNM ...

Ribo-seq
TTG moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain, HeLa
96164 30

CTG ...

LWC ...

Ribo-seq
CTG moderate 28 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
96156 78

GTG ...

VKL ...

Ribo-seq
GTG moderate 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
96134 30

CTG ...

LQV ...

Ribo-seq
CTG 28 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
1046657 57

ATG ...

MER ...

Ribo-seq
ATG strong 3 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, guo_2014, HEK293,
HeLa, HFF
934536 66

ATG ...

MSG ...

Ribo-seq
ATG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Brain, HEK293, HeLa,
hES
405008 57

CGC ...

RSP ...

Ribo-seq
CGC moderate 1 sORFs_org_Human
    sORF
    Upstream
HCT116
405014 39

GAC ...

DDA ...

Ribo-seq
GAC strong 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
1816995 45

ATG ...

MAV ...

Ribo-seq
ATG strong 2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
898149 117

TTC ...

FET ...

Ribo-seq
TTC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
405016 30

CCT ...

PLL ...

Ribo-seq
CCT moderate 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
617 183

CTG ...

LES ...

Ribo-seq
CTG 27 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
405030 96

TGC ...

CPG ...

Ribo-seq
TGC weak 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
1817027 54

CTG ...

LFS ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
898164 48

TCT ...

STP ...

Ribo-seq
TCT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1816997 66

CTG ...

LWH ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
99330 273

GTG ...

VQG ...

Ribo-seq
GTG 26 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
524623 126

CTG ...

LRS ...

Ribo-seq
CTG weak 5 sORFs_org_Human
    Alternative
    sORF
    Upstream
HEK293, HeLa, loayza_puch_2016,
RPE-1, U2OS
1817011 81

TTG ...

LKV ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
96132 99

CTG ...

LEK ...

Ribo-seq
CTG 19 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, RPE-1,
THP-1, U2OS
1817009 36

ATG ...

MLR ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
Johnstone2016
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
898153 72

TCC ...

SCR ...

Ribo-seq
TCC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
96174 30

TTG ...

LHG ...

Ribo-seq
TTG weak 26 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
898151 111

ACC ...

TAV ...

Ribo-seq
ACC 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
1046631 63

CTG ...

LES ...

Ribo-seq
CTG 3 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
guo_2014, HeLa
96136 159

ATG ...

MMS ...

Ribo-seq
ATG moderate 17 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Brain_tumor, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, loayza_puch_2016, RPE-1,
U2OS
98280 153

GTG ...

VQG ...

Ribo-seq
GTG 21 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, loayza_puch_2016, MM1S,
RPE-1, THP-1, U2OS
96140 150

ATG ...

MNG ...

Ribo-seq
ATG weak 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
loayza_puch_2016, MM1S, RPE-1,
THP-1, U2OS
405036 96

CCG ...

PEM ...

Ribo-seq
CCG strong 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116
1816987 39

TTG ...

LKA ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817013 75

CTG ...

LFP ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817017 42

TTG ...

LAE ...

Ribo-seq
TTG strong 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1817007 66

CTG ...

LSR ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1817015 57

GTG ...

VNC ...

Ribo-seq
GTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1046655 147

ATG ...

MTG ...

Ribo-seq
ATG weak 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
guo_2014
96138 156

ATG ...

MSM ...

Ribo-seq
ATG moderate 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
loayza_puch_2016, MM1S, RPE-1,
THP-1, U2OS
96146 102

ATG ...

MLI ...

Ribo-seq
ATG weak 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, loayza_puch_2016,
MM1S, RPE-1, THP-1,
U2OS
1046652 177

TTG ...

LIA ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
guo_2014
405018 147

AAT ...

NGL ...

Ribo-seq
AAT strong 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, HEK293, Jurkat
96170 102

CTG ...

LPT ...

Ribo-seq
CTG 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MM1S, THP-1, U2OS
1817039 60

TTG ...

LIR ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
405032 69

TTC ...

FKT ...

Ribo-seq
TTC weak 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
900301 261

GCG ...

AAQ ...

Ribo-seq
GCG 4 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
HEK293, HeLa, Jurkat,
THP-1
96168 105

GTG ...

VLP ...

Ribo-seq
GTG 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MM1S, THP-1, U2OS

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS