Transcript 279499

Transcript

ID CARD

MetamORF ID

279499

ENST00000369937

Name

CUEDC2-201

Strand

Biotype

protein_coding

Start-end positions

102423245-102432661

CDS Start-stop positions

102423426-102425188

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:28352

Aliases

C10orf66,
CUEDC2, ENSG00000107874, HGNC:28352,
MGC2491, NCBI:79004, OFF:CUEDC2

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1720340	141	TTG ...	LSR ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, MM1S, RPE-1
279505	159	GTG ...	VQP ...	Ribo-seq	GTG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1
3303877	864	ATG ...	MEL ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1817164	36	TTG ...	LRH ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
1135001	123	CTG ...	LAI ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative Overlapping sORF Upstream	HAP1, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1
2092516	159	CTG ...	LQT ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2305326	249	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
279503	210	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
279498	174	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
2305318	69	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
898526	99	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279501	195	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
279507	108	GTG ...	VSL ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1720334	168	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
1296359	147	TTG ...	LPL ...	Ribo-seq	TTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, MM1S, RPE-1
2305330	33	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
1720338	285	ATG ...	MPG ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1983527	51	ATG ...	MAA ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
279511	240	GTG ...	VGA ...	Ribo-seq	GTG		4	sORFs_org_Human	Overlapping sORF Upstream	HEK293, LCL, MM1S, RPE-1
279509	114	CTG ...	LSV ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1
405767	138	GCA ...	APR ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
2305321	162	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1720336	246	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
900410	135	CCG ...	PRG ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
3303880	147	ATG ...	MRA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Overlapping sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
2302367	30	ATG ...	MCG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
632222	39	ATG ...	MCL ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
1720332	165	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231

Export data