Transcript 163 | MetamORF

Transcript

ID CARD

MetamORF ID

163

ENST00000369797

Name

PDCD11-201

Strand

Biotype

protein_coding

Start-end positions

103396648-103446292

CDS Start-stop positions

103398427-103445549

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:13408

Aliases

ALG-4,
ENSG00000148843, HGNC:13408, KIAA0185,
NCBI:22984, NFBP, OFF:PDCD11,
PDCD11, RRP5

Chr 10

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278067	75	TTG ...	LEC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, THP-1
2302582	60	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
278044	63	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
279583	105	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
2539758	33	TTG ...	LMG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
278042	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231
279579	60	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
279591	99	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
278030	72	CTG ...	LNS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
278040	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
278056	39	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
2302604	117	CTG ...	LLC ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
631594	114	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, THP-1
278046	30	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	LCL
279589	78	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2302620	30	GTG ...	VGV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2539760	30	ATG ...	MGP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279571	120	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
278028	78	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL
279587	123	GTG ...	VSH ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
278054	36	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2302630	87	ATG ...	MWM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279581	171	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
279595	90	GTG ...	VTP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
278048	42	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2302610	51	CTG ...	LHC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
278036	72	ATG ...	MPM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
278052	30	ATG ...	MRM ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
2539756	39	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2539774	60	TTG ...	LRW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2302618	42	CTG ...	LWY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
278082	75	ATG ...	MAL ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2302602	87	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278034	105	CTG ...	LDA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
278026	105	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
2302616	57	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2302595	30	TTG ...	LPE ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2302600	102	TTG ...	LSP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278060	102	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
279585	87	ATG ...	MNW ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
278020	96	ATG ...	MCG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279573	108	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
279597	42	TTG ...	LSD ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
278071	66	GTG ...	VGG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
278069	48	CTG ...	LGG ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
278050	33	TTG ...	LMR ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
278032	60	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL
278038	66	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
279593	114	GTG ...	VFG ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
278022	120	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
278024	108	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
631592	123	CTG ...	LHP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, THP-1
162	69	TTG ...	LPT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2540944	60	CTG ...	LKG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2305437	114	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2302613	105	GTG ...	VLS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2302624	48	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
279575	105	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
278058	30	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2305439	63	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
279577	78	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL

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