Transcript 173 | MetamORF

Transcript

ID CARD

MetamORF ID

173

ENST00000369755

Name

SLK-202

Strand

Biotype

protein_coding

Start-end positions

103967201-104029233

CDS Start-stop positions

103967746-104025720

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:11088

Aliases

ENSG00000065613,
HGNC:11088, KIAA0204, NCBI:9748,
OFF:SLK, se20-9, SLK,
STK2

Chr 10

ORFs

106 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99418	57	GTG ...	VIP ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
2302822	114	ATG ...	MRE ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
278131	75	ATG ...	MKN ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2302797	96	CTG ...	LKL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
172	36	TTG ...	LVP ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
2678949	39	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
278129	135	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
278160	30	CTG ...	LKN ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2302769	36	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2302824	87	ATG ...	MRI ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2305462	255	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2302771	108	CTG ...	LEK ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1719603	72	CTG ...	LRI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2302773	78	TTG ...	LIV ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
279601	63	ATG ...	MPS ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, LCL, MDA-MB-231, RPE-1
2302754	105	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
3199706	159	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
278141	57	ATG ...	MKT ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
2305454	84	ATG ...	MWM ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
2302795	30	CTG ...	LTV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1719589	66	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, RPE-1
898777	48	AAA ...	KRM ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
98583	39	TTG ...	LYF ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1719600	42	CTG ...	LWR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
3199564	132	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2302765	66	CTG ...	LTQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2539816	54	CTG ...	LRK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1
1501773	171	TTG ...	LLH ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
278126	153	ATG ...	MLV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, LCL, MDA-MB-231
278109	39	TTG ...	LCR ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
2302763	78	TTG ...	LKI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2302734	30	CTG ...	LMF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278137	87	GTG ...	VRQ ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1
278105	42	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
481099	72	ATG ...	MSA ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, MDA-MB-231
2302818	144	TTG ...	LLH ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1719607	48	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
2305460	270	ATG ...	MAK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
631609	69	TTG ...	LFL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, MDA-MB-231, RPE-1, THP-1
278133	60	CTG ...	LMN ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2302743	33	CTG ...	LLI ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	hES, MDA-MB-231
481094	114	ATG ...	MRI ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, MDA-MB-231
278101	102	GTG ...	VQG ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	Alternative Overlapping sORF Upstream	HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1720364	33	TTG ...	LVH ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
278157	33	GTG ...	VWW ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
278153	69	CTG ...	LSQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1
480847	45	ATG ...	MKN ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, MDA-MB-231
278117	42	ATG ...	MTT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
3199708	120	AGA ...	RNM ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2305456	78	ATG ...	MPG ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
278143	48	GTG ...	VLR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
278103	90	CTG ...	LCW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative Overlapping sORF Upstream	HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
278115	66	GTG ...	VKH ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1501037	99	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	BJ
1719593	36	ATG ...	MPG ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
480844	39	GTG ...	VDY ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa
2302741	39	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2302793	39	GTG ...	VKF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1719605	54	ATG ...	MIM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
278120	207	GTG ...	VHL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
279603	36	TTG ...	LCR ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1134388	33	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
98587	42	GTG ...	VIP ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
2302745	219	CTG ...	LQV ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278145	45	CTG ...	LRI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
898775	33	GCA ...	ADF ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2302761	102	ATG ...	MKE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2302775	72	GTG ...	VKL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278139	75	ATG ...	MWL ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1
1501035	30	GTG ...	VAA ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, hES
279608	45	CTG ...	LKN ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
278135	57	ATG ...	MNL ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2302820	141	CTG ...	LHK ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
900483	90	AAA ...	KRM ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898779	39	CCA ...	PHQ ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
98585	36	CTG ...	LVP ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
3199554	36	AAT ...	NKQ ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1719598	51	CTG ...	LKR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1501050	42	TTG ...	LPG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231, RPE-1
1501775	168	CTG ...	LHK ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
278122	198	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
481092	165	CTG ...	LQF ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
3199704	171	GAG ...	EKL ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2302767	45	CTG ...	LWT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278113	30	ATG ...	MII ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
278147	105	ATG ...	MRN ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
2092117	33	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2092115	36	CTG ...	LVV ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
481097	81	GTG ...	VKP ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, MDA-MB-231
2305458	276	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
278151	81	GTG ...	VKK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1
3199556	30	ATC ...	IDI ...	Ribo-seq	ATC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1501777	141	ATG ...	MRE ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
2302777	66	TTG ...	LGL ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
900485	153	AGC ...	SSK ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278111	39	TTG ...	LQA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
278155	54	CTG ...	LKK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
900487	147	AAG ...	KND ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278124	177	CTG ...	LKK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
278149	87	CTG ...	LKV ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1
2092113	42	CTG ...	LRL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278162	42	GTG ...	VKP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
279605	84	TTG ...	LEY ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
900490	132	AAG ...	KKN ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278107	30	CTG ...	LKK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1719591	42	ATG ...	MWM ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1

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