Transcript 176 | MetamORF

Transcript

ID CARD

MetamORF ID

176

ENST00000369710

Name

GSTO1-201

Strand

Biotype

protein_coding

Start-end positions

104254710-104267459

CDS Start-stop positions

104254929-104267405

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:13312

Aliases

ENSG00000148834,
GSTO1, GSTTLp28, HGNC:13312,
NCBI:9446, OFF:GSTO1, P28

Chr 10

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
175	90	CTG ...	LPS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
631611	48	CTG ...	LRH ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
898792	42	GAA ...	EDD ...	Ribo-seq	GAA	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
190	42	CTG ...	LAR ...	Ribo-seq	CTG	strong	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
178	78	GTG ...	VST ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1296215	69	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
898788	207	GAG ...	EDA ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898790	57	ACC ...	TQG ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2615920	33	GAA ...	ESG ...	Ribo-seq	GAA		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, THP-1
182	33	ATG ...	MTP ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
180	66	ATG ...	MKH ...	Ribo-seq	ATG	weak	21	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
2615918	30	AGT ...	SPE ...	Ribo-seq	AGT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
900496	42	GAG ...	EDA ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184	45	TTG ...	LIT ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, LCL, Monocyte
898798	45	AGA ...	RLA ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3199569	39	GCA ...	ARF ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3300622	726	ATG ...	MSG ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
898796	69	CAC ...	HSK ...	Ribo-seq	CAC	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
405240	78	CCT ...	PAN ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
186	81	GTG ...	VCR ...	Ribo-seq	GTG	weak	25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
98598	33	TTG ...	LPE ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
188	51	GTG ...	VDG ...	Ribo-seq	GTG	strong	25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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