Transcript 99444 | MetamORF

Transcript

ID CARD

MetamORF ID

99444

ENST00000369683

Name

XPNPEP1-203

Strand

Biotype

protein_coding

Start-end positions

109864766-109923511

CDS Start-stop positions

109865184-109891794

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:12822

Aliases

ENSG00000108039,
HGNC:12822, NCBI:7511, OFF:XPNPEP1,
XPNPEP, XPNPEP1, XPNPEPL,
XPNPEPL1

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
632270	276	TTG ...	LNC ...	Ribo-seq	TTG		4	sORFs_org_Human	Overlapping sORF Upstream	HEK293, RPE-1, THP-1
632264	150	GTG ...	VTE ...	Ribo-seq	GTG		10	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
405803	165	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Human	Overlapping sORF Upstream	HCT116
99435	57	ATG ...	MRC ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
632266	180	CTG ...	LRQ ...	Ribo-seq	CTG		13	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
3304021	102	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
2302907	69	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279616	54	ATG ...	MWI ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279628	63	ATG ...	MLL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
99443	192	CTG ...	LLR ...	Ribo-seq	CTG		14	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
99446	204	GTG ...	VTS ...	Ribo-seq	GTG		14	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
278187	69	ATG ...	MGF ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
279634	78	ATG ...	MRL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

Export data