Transcript 2145 | MetamORF

Transcript

ID CARD

MetamORF ID

2145

ENST00000367196

Name

CTSD-202

Strand

Biotype

protein_coding

Start-end positions

1757324-1762403

CDS Start-stop positions

-1761431

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:2529

Aliases

CLN10,
CPSD, CTSD, ENSG00000117984,
HGNC:2529, NCBI:1509, OFF:CTSD

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
533482	270	CTG ...	LGT ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	BJ, Brain, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
2149	144	GTG ...	VSK ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
526664	42	TTG ...	LTS ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
915743	81	CCT ...	PPS ...	Ribo-seq	CCT		1	sORFs_org_Human	sORF	Jurkat
7839	195	CTG ...	LPG ...	Ribo-seq	CTG		25	sORFs_org_Human	sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2144	69	ATG ...	MAS ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2616873	153	AGA ...	RLA ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF	HeLa, THP-1
2147	120	TTG ...	LGR ...	Ribo-seq	TTG	moderate	20	sORFs_org_Human	sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
936108	30	ATG ...	MAR ...	Ribo-seq	ATG	strong	10	sORFs_org_Human	sORF	Blood, Brain, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
2153	30	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	Flp-In_T-REx-293
2151	156	CTG ...	LPW ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
915747	165	AGT ...	STT ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	Jurkat
2616118	171	CAG ...	QRR ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	sORF	HeLa, THP-1
2616116	42	AGC ...	SRS ...	Ribo-seq	AGC	weak	2	sORFs_org_Human	sORF	HeLa, THP-1
533484	276	TTG ...	LAL ...	Ribo-seq	TTG		12	sORFs_org_Human	sORF	BJ, Brain, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, Monocyte, RPE-1, THP-1, U2OS
282253	54	ATG ...	MVP ...	Ribo-seq	ATG	strong	21	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, U2OS
7841	183	CTG ...	LSP ...	Ribo-seq	CTG		24	sORFs_org_Human	sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
533486	300	ATG ...	MPL ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, Brain, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, Monocyte, U2OS
7837	150	TTG ...	LAS ...	Ribo-seq	TTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
3199897	36	AGC ...	SWW ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	sORF	HEK293
3199899	81	CAG ...	QPS ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	sORF	HEK293
915745	114	TCT ...	SST ...	Ribo-seq	TCT		1	sORFs_org_Human	sORF	Jurkat

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