Transcript 13451 | MetamORF

Transcript

ID CARD

MetamORF ID

13451

ENST00000366333

Name

ANAPC5-202

Strand

Biotype

retained_intron

Start-end positions

121318535-121321111

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:15713

Aliases

ANAPC5,
APC5, ENSG00000089053, HGNC:15713,
NCBI:51433, OFF:ANAPC5

Chr 12

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110793	60	ATG ...	MAN ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, Jurkat, MDA-MB-231
705202	39	ATT ...	IHL ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
705200	45	GTT ...	VHC ...	Ribo-seq	GTT		1	sORFs_org_Human	Intronic sORF	Jurkat
1519405	57	CTG ...	LFQ ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293
1832294	66	GTG ...	VFF ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
705204	66	CAT ...	HLA ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	Jurkat
110797	33	GTG ...	VIK ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
110790	42	CTG ...	LIH ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231
3123998	48	GTG ...	VCF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	hES
110788	33	TTG ...	LLQ ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231
13450	63	TTG ...	LAD ...	Ribo-seq	TTG		20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
110795	63	ATG ...	MMA ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231

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